Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_A21
(778 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81449-9|CAB03760.3| 700|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81449-8|CAI70399.1| 705|Caenorhabditis elegans Hypothetical pr... 44 1e-04
X64415-2|CAA45761.1| 700|Caenorhabditis elegans unc-93 protein. 44 1e-04
X64415-1|CAA45760.1| 705|Caenorhabditis elegans unc-93 protein. 44 1e-04
U00053-1|AAZ94293.1| 548|Caenorhabditis elegans Acetylcholine r... 29 3.7
U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical pr... 28 6.5
L23645-1|AAK26138.1| 582|Caenorhabditis elegans Hypothetical pr... 28 8.6
AL132876-26|CAC48128.1| 922|Caenorhabditis elegans Hypothetical... 28 8.6
AL132876-25|CAH04764.1| 930|Caenorhabditis elegans Hypothetical... 28 8.6
AL132876-9|CAD21661.1| 959|Caenorhabditis elegans Hypothetical ... 28 8.6
>Z81449-9|CAB03760.3| 700|Caenorhabditis elegans Hypothetical
protein C46F11.1b protein.
Length = 700
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = +3
Query: 561 RIVKNVLVISLAFMTQFTAYSGAANLQSSINXXXXXXXXXXXXXXXXXILSNIFLPVFVI 740
+I+ N+ ++S+AF+ FTA++G NLQ+S+N +S++F+P F+I
Sbjct: 240 KIMSNLWILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMI 297
Query: 741 KWLGTKWT 764
LG K T
Sbjct: 298 NRLGCKLT 305
>Z81449-8|CAI70399.1| 705|Caenorhabditis elegans Hypothetical
protein C46F11.1a protein.
Length = 705
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = +3
Query: 561 RIVKNVLVISLAFMTQFTAYSGAANLQSSINXXXXXXXXXXXXXXXXXILSNIFLPVFVI 740
+I+ N+ ++S+AF+ FTA++G NLQ+S+N +S++F+P F+I
Sbjct: 245 KIMSNLWILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMI 302
Query: 741 KWLGTKWT 764
LG K T
Sbjct: 303 NRLGCKLT 310
>X64415-2|CAA45761.1| 700|Caenorhabditis elegans unc-93 protein.
Length = 700
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = +3
Query: 561 RIVKNVLVISLAFMTQFTAYSGAANLQSSINXXXXXXXXXXXXXXXXXILSNIFLPVFVI 740
+I+ N+ ++S+AF+ FTA++G NLQ+S+N +S++F+P F+I
Sbjct: 240 KIMSNLWILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMI 297
Query: 741 KWLGTKWT 764
LG K T
Sbjct: 298 NRLGCKLT 305
>X64415-1|CAA45760.1| 705|Caenorhabditis elegans unc-93 protein.
Length = 705
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = +3
Query: 561 RIVKNVLVISLAFMTQFTAYSGAANLQSSINXXXXXXXXXXXXXXXXXILSNIFLPVFVI 740
+I+ N+ ++S+AF+ FTA++G NLQ+S+N +S++F+P F+I
Sbjct: 245 KIMSNLWILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMI 302
Query: 741 KWLGTKWT 764
LG K T
Sbjct: 303 NRLGCKLT 310
>U00053-1|AAZ94293.1| 548|Caenorhabditis elegans Acetylcholine
receptor protein 5 protein.
Length = 548
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 360 VNDYLILLHRSNKTNVSSYNASLRLNLIEESQRTL 256
V+D+ L +S + ++YNA+ LIEE QR L
Sbjct: 58 VDDFQTQLKKSLENTTAAYNATFMQELIEERQRYL 92
>U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical
protein C50E3.7 protein.
Length = 323
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 186 NIFLIDIHIDCLKVNPRQYLFKRKVFF 266
N+F I + + C+K ++ LFK+ FF
Sbjct: 89 NLFNISVQLSCVKFIDKRALFKKSTFF 115
>L23645-1|AAK26138.1| 582|Caenorhabditis elegans Hypothetical
protein F54F2.5a protein.
Length = 582
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 638 QIRRTAVRSELRHKRQTYHQNILHYSSSSVHLNLSLTVYFFRHFE 504
+IR+ V ++ + R H+ I + S HL + T+ F H E
Sbjct: 247 EIRKGTVDLQVHYMRVHKHEGIRTFKCSVCHLRFTTTILFRDHVE 291
>AL132876-26|CAC48128.1| 922|Caenorhabditis elegans Hypothetical
protein Y105E8A.10c protein.
Length = 922
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 539 GSGARNWKNSEECSGDKF 592
G+G R W+ ECSG KF
Sbjct: 250 GTGNRRWEREAECSGVKF 267
>AL132876-25|CAH04764.1| 930|Caenorhabditis elegans Hypothetical
protein Y105E8A.10b protein.
Length = 930
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 539 GSGARNWKNSEECSGDKF 592
G+G R W+ ECSG KF
Sbjct: 258 GTGNRRWEREAECSGVKF 275
>AL132876-9|CAD21661.1| 959|Caenorhabditis elegans Hypothetical
protein Y105E8A.10a protein.
Length = 959
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 539 GSGARNWKNSEECSGDKF 592
G+G R W+ ECSG KF
Sbjct: 287 GTGNRRWEREAECSGVKF 304
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,946,614
Number of Sequences: 27780
Number of extensions: 301170
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -