Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A20
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    74   2e-14
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    27   2.2  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    26   3.8  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   5.0  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   8.7  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   8.7  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   8.7  

>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
 Frame = +2

Query: 275 VLTHVGLYVLMFLGFVNQLIFKPKAATE----KNRXGYAPLYDPFXQFFSRYVYRRVRHC 442
           V T++   VL+ +G V     K     +    K+  GYAPLY+ F  F+ R +  R+  C
Sbjct: 94  VATYLTYLVLIIIGHVRDFFGKRFHKDDYKYLKDNDGYAPLYNHFDNFYVRRLQHRINDC 153

Query: 443 FNRPICSAPGAEVVLKEWESTDHNWTFKFTGVERRCVNLGSYNYL 577
           F+RP    PG  + L    STD N TFK TG     +N+ SYNYL
Sbjct: 154 FSRPTMGVPGRVIRLMNRYSTDSNSTFKLTGDTSLALNVSSYNYL 198


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 380 PLYDPFXQFFSRYVYRRVRHCFNRPICSAPGAEVVLKEWESTDHNWTFK 526
           P  DP      RYV R VR  +   +C +P         ++ D +W F+
Sbjct: 326 PTLDPENVRIKRYVQRLVRCDYTWHLCKSPFKRSTGNTNDNDDPSWRFR 374


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 120 ILPLINFSSCSYDFLVVFSESP 55
           ++  I +S   YDF+  FSESP
Sbjct: 338 LIQAITYSQSKYDFMKKFSESP 359


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 62  SLKTTKKSYEQDEKLINGKIKDRKNGYMKSTQSNGSTPKMTQVEGGGLP 208
           +LK T  +  +   L+NG+ K +   +  +  +  S+PK+++ +   LP
Sbjct: 25  NLKKTNSTPFRKNYLLNGRTKLKLENFAYNASTEISSPKISEKKHSSLP 73


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 395 FXQFFSRYVYRRVRHCFN 448
           F +FF+R+ + RV+ CF+
Sbjct: 81  FNKFFNRHPFTRVKSCFS 98


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +1

Query: 238 PGLVREVFPTDRRPHAR---WTLRSHVPGLRQPAHIQ 339
           P    E+ PT   P+     WT+ S+VP    P  +Q
Sbjct: 243 PPYPAEIIPTSNVPNREEKDWTVTSNVPNKEPPISVQ 279


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +2

Query: 41  VDIGDGDSL-KTTKKSYEQDEKLINGKIKDRKNGYMKSTQSNGSTPKMTQVEGGGLPKID 217
           +D+G   S  KT + +      L    +K R++   +S++     P M  +    LP+  
Sbjct: 376 IDVGSSQSSSKTARLNSSPKSTLKTSSVKTRRSHSAQSSRKVSDYPNMVVITPADLPE-- 433

Query: 218 WSKYDTFPGSFE 253
               DT  GS E
Sbjct: 434 --GIDTTQGSME 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,156
Number of Sequences: 5004
Number of extensions: 44330
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)