Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_A20
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0455 + 17903921-17904046,17904149-17904214,17905028-179051... 72 4e-13
01_07_0051 - 40759529-40759624,40759728-40759835,40759972-407601... 64 6e-11
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526... 64 8e-11
01_07_0052 - 40767252-40767347,40767455-40767562,40767689-407678... 53 2e-07
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701... 31 0.73
03_06_0415 - 33775143-33775305,33775438-33775565,33775654-337757... 27 8.9
>11_04_0455 +
17903921-17904046,17904149-17904214,17905028-17905116,
17905513-17905658,17905743-17905867,17905964-17906057,
17906144-17906307,17906449-17906610,17906683-17906809,
17906854-17906862,17906912-17907078,17907113-17907307,
17907398-17907490
Length = 520
Score = 71.7 bits (168), Expect = 4e-13
Identities = 47/108 (43%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Frame = +2
Query: 269 TAVLTHVGLYVLMFL-----GFVNQLIFKPKAATEKNRXGYAPLYDPFXQFFSRYVYRRV 433
T LT + Y L+F F +LI KA KN GYAP+ F+ R +Y R+
Sbjct: 7 TTALTTLFSYGLLFAFGQLRDFFRKLIDWFKA---KNVKGYAPICLGLEDFYVRRLYLRI 63
Query: 434 RHCFNRPICSAPGAEVVLKEWESTDHNWTFKFTGVERRCVNLGSYNYL 577
+ CF RPI SAP A + E S D N T K T RC+NLGSYNYL
Sbjct: 64 QDCFGRPIASAPDAWFDVVERYSNDSNKTLKRTSNTTRCLNLGSYNYL 111
>01_07_0051 -
40759529-40759624,40759728-40759835,40759972-40760138,
40760670-40760796,40760885-40761046,40761235-40761398,
40761561-40761654,40761736-40761860,40762304-40762449,
40762796-40762884,40763453-40763518,40763824-40763973
Length = 497
Score = 64.5 bits (150), Expect = 6e-11
Identities = 36/77 (46%), Positives = 41/77 (53%)
Frame = +2
Query: 347 AATEKNRXGYAPLYDPFXQFFSRYVYRRVRHCFNRPICSAPGAEVVLKEWESTDHNWTFK 526
AA N GYAP+ F+ R RRV+ CF RPI S P A + E S D N T
Sbjct: 43 AAAGTNLKGYAPICGGQEDFYYRRFVRRVQDCFWRPIASKPDAWFDVVERYSNDSNKTLH 102
Query: 527 FTGVERRCVNLGSYNYL 577
T RC+NLGSYNYL
Sbjct: 103 RTTKTSRCLNLGSYNYL 119
>01_07_0050 -
40751994-40752086,40752193-40752300,40752501-40752667,
40752756-40752882,40752984-40753145,40753674-40753837,
40753931-40754024,40754160-40754284,40754387-40754532,
40754676-40754764,40755524-40755589,40755990-40756148
Length = 499
Score = 64.1 bits (149), Expect = 8e-11
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +2
Query: 326 QLIFKPKAATEK----NRXGYAPLYDPFXQFFSRYVYRRVRHCFNRPICSAPGAEVVLKE 493
+L+F AA + N GYAP+ F+ R +RRV+ CF RPI S P A + E
Sbjct: 35 RLLFSSAAAADSPAGCNSKGYAPICVGKEDFYIRRFFRRVQDCFGRPIASKPDAWFDVVE 94
Query: 494 WESTDHNWTFKFTGVERRCVNLGSYNYL 577
STD N T T +C+NL S+NYL
Sbjct: 95 RYSTDSNKTLHCTTKTSKCLNLASFNYL 122
>01_07_0052 -
40767252-40767347,40767455-40767562,40767689-40767855,
40767930-40768056,40768138-40768299,40768467-40768630,
40768722-40768815,40768892-40769016,40769110-40769255,
40769361-40769449,40769564-40769608,40770165-40770230,
40770332-40770457
Length = 504
Score = 52.8 bits (121), Expect = 2e-07
Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Frame = +2
Query: 347 AATEKNRXGYAPLYDPFXQFFSRYVYRRVRH---------------CFNRPICSAPGAEV 481
A N GYAP+ F++R +Y R++ CF RPI SAP A
Sbjct: 35 AGKSSNLKGYAPICLGLEDFYTRRLYLRIQEVGISEPYRLITPAMDCFGRPIASAPDAWF 94
Query: 482 VLKEWESTDHNWTFKFTGVERRCVNLGSYNYL 577
+ E S D N T T +C+NLGSYNYL
Sbjct: 95 DVVERYSNDSNKTLHRTTKTSKCLNLGSYNYL 126
>03_02_0270 -
7011363-7012302,7013237-7013640,7014264-7014333,
7014835-7015331,7015959-7016283,7018060-7018292
Length = 822
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 145 EVHAV*WINAEDDTSGG-RRPAKDRLVQVRHVPGLVREVFPTDRRPHARWTL 297
EV A W AED+ G RR + LV+ R +PG +R+ R W L
Sbjct: 8 EVEAARWAEAEDERKEGLRRRRRYGLVEYRALPGYMRDNEYILRHYRCEWPL 59
>03_06_0415 -
33775143-33775305,33775438-33775565,33775654-33775761,
33775809-33775909,33776265-33776805,33777290-33777847
Length = 532
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +2
Query: 53 DGDSLKTTKKSYEQDEKLINGKIKDRKNGYMKSTQSNGSTPKMTQVEGGGLPKIDWSKYD 232
D + K +K E+DEK K ++ + ++ T +T + GLP I SK
Sbjct: 420 DIEKKKEERKQKERDEKEKQEKTEEYRRNCIQCVMGPEGTV-VTFPDKMGLPSIFDSKPI 478
Query: 233 TFPGSFEKCS 262
++P EKC+
Sbjct: 479 SYPPPREKCA 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,628
Number of Sequences: 37544
Number of extensions: 320887
Number of successful extensions: 1006
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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