Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A19
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.5  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   10.0 

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 406 SEVILLDDSKVSTRTCRL 353
           +E ++LDDSK    TC L
Sbjct: 169 NEPVVLDDSKEEHPTCAL 186


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 345 LVISLQVRVETLESSSSITSDCIQVQS 425
           LV+   + +  L+   + T+DC QV S
Sbjct: 201 LVVDENIELPQLQLVKNYTADCTQVYS 227


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 171 WLDRNVYNDAEKAYYESLSKMDSV 242
           W DR + N  +K   + +S  D+V
Sbjct: 340 WCDRVLLNPTDKMLVQDISSPDAV 363


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +3

Query: 711 LAYGIHKLQISCVVEDDKVSIDWLTXEI 794
           + +G++K    C+V   K+  +W+  +I
Sbjct: 46  ITFGVNKWSKVCIVVRRKLEENWIHVDI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,102
Number of Sequences: 438
Number of extensions: 3440
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)