Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_A15
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 31 0.91
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 31 1.2
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 28 6.4
02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833 28 6.4
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 28 6.4
11_06_0713 + 26524984-26525276,26526008-26526434,26526550-265271... 28 8.5
10_08_0261 + 16305388-16306104 28 8.5
08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579 28 8.5
07_03_0132 - 14011468-14012124 28 8.5
02_05_1137 - 34372803-34372869,34373088-34373229,34373334-343734... 28 8.5
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 31.1 bits (67), Expect = 0.91
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +2
Query: 137 LDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQFKLPSSA 292
L KGSPRS + P P E +E+Q+ DG L++ VVQ PS A
Sbjct: 3519 LQDKGSPRSTQ--PPPPIESSEKESQIAE---DGQTVLLQSSVVQESTPSLA 3565
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +1
Query: 352 APPSLGHRQTKDHGPHPPILGHHRLRS---RQSRRTCQDLTPGRRYHCSEEAAGQQAHRD 522
+PP H + P + GH R RS R+ Q +P RR +++GQ D
Sbjct: 656 SPPGRSHCHSHSRSRSPELRGHARSRSCSPATGRQDNQSTSPQRREKHQTKSSGQAKEHD 715
Query: 523 QLR 531
+ R
Sbjct: 716 EKR 718
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 469 GRRYHCSEEAAGQQAHRDQLRSGRPSSP 552
GR + EAAG QA R Q RP++P
Sbjct: 59 GRSSAAAAEAAGSQARRSQSTERRPATP 86
>02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833
Length = 359
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 415 HHRLRSRQSRRTCQDLTPGRRYHCSEE 495
HHR +Q ++ DL PG R+H ++E
Sbjct: 7 HHRQMMQQQQQQEMDLPPGFRFHPTDE 33
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 197 KAREAQVESRLVDGVADFLENYVVQFKLPSSAVEGMRRSLD 319
K RE+ ++ RL+ V DF E Y Q K +++ +D
Sbjct: 121 KGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEID 161
>11_06_0713 +
26524984-26525276,26526008-26526434,26526550-26527171,
26528059-26528099,26528181-26528249,26528565-26528665,
26529300-26529378,26529955-26530053,26530129-26530197,
26530326-26530375,26530482-26530548,26531031-26531125,
26534469-26534856
Length = 799
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 420 MMPKNRGMRAMIFSLAMAKRGRSCLIFFFLPRASSSDLLMPSTAE 286
+M K R ++F A+A R C++ FLPR S LL + +
Sbjct: 487 LMKKLRHPNVILFMGAVASLQRLCIVTEFLPRGSLFRLLQKNAGK 531
>10_08_0261 + 16305388-16306104
Length = 238
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 355 PPSLG--HRQTKDHGPHPPILGHHRLRSRQSRRTCQDLTPGRRYHCSEEAAGQQAHRDQL 528
PP+ G HR + H H P+L HR RQ R+ + P H Q HR++
Sbjct: 186 PPAKGNSHRAFQKH--HRPVLRRHR---RQPRQEVHQVRPDGDRHA-------QDHRERH 233
Query: 529 RSGRP 543
+GRP
Sbjct: 234 ATGRP 238
>08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579
Length = 458
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 469 GRRYHCSEEAAGQQAHRDQLRSGRPSSPRG 558
GRR E G+ A D R+GRP S RG
Sbjct: 411 GRRAREEREKVGKGAEGDSHRAGRPMSLRG 440
>07_03_0132 - 14011468-14012124
Length = 218
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 138 WTAKA-HPGLPGPWSHCPRSPRPGKHRSSLG 227
W A + G+PG W H PR G S+G
Sbjct: 176 WKAAGENAGVPGDWGHDPRGKLGGIEEESMG 206
>02_05_1137 -
34372803-34372869,34373088-34373229,34373334-34373403,
34373521-34373823,34374215-34374280,34374425-34374490,
34374584-34374682,34376153-34376310,34376951-34377039,
34377209-34377591
Length = 480
Score = 27.9 bits (59), Expect = 8.5
Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Frame = +1
Query: 373 RQTKDHGPHPPILGHHRLRSRQSR---RTCQD-LTP---GRRYHCSEEAAGQQAHRDQLR 531
RQ +D PP H RL Q C D LT RR HC+ EA G R
Sbjct: 165 RQQQDRYAAPPD-EHARLEQHQQAAHAHPCGDELTDPERSRRKHCTGEALGSSESEQPTR 223
Query: 532 SGRPSSPR 555
RP R
Sbjct: 224 PARPRGKR 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,972,152
Number of Sequences: 37544
Number of extensions: 373358
Number of successful extensions: 1303
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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