Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A13
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3...    83   3e-17
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   2.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.9  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   6.5  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   6.5  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   6.5  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    25   8.6  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    25   8.6  

>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 158

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 44/101 (43%), Positives = 60/101 (59%)
 Frame = +1

Query: 244 LVFEXACNEXLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKHGTYVINRQIPNKQ 423
           L +    ++ L+ L D FE L+E+    K  D+ Y++GV+T+ LG+ GTYVIN+Q P  Q
Sbjct: 45  LEYHRVADDTLDVLNDTFEDLLEEVGK-KDYDIQYANGVITLMLGEKGTYVINKQPPAHQ 103

Query: 424 IWLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEIS 546
           IWLSSP SGPK Y+  L+    W    D  TL  +L  E S
Sbjct: 104 IWLSSPVSGPKHYEYSLK-SKTWCSTRDEGTLLGILSSEFS 143


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 351  RWCINHIIRKARDIC 395
            RWC  H+ RK +++C
Sbjct: 982  RWCTKHLQRKTKEVC 996


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 4   PADDTSCXHASQNHLPXSHFTSCFGISSVPAGGWCGCKSXVSP 132
           P   TS    + + LP +  TSC   +S+P GG     + ++P
Sbjct: 208 PPTSTSSTDTNSSPLPTTS-TSCTTSTSIPTGGSSSLSTPITP 249


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 388 TYVINRQIPNKQIWLSSPTSGPKRYDLVLEGGGYWIYKH 504
           TY  +R I  K  + ++  + P+ + + L   GY +Y H
Sbjct: 11  TYSFDRVITGKICFETNAATSPRSFQIQLRIKGYAVYHH 49



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 79  ISSVPAGGWCGCKSXVSPPS 138
           I+S+P   +C  K  VSPPS
Sbjct: 368 ITSLPTASFCPVKHGVSPPS 387


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 454 LVQTWGSSTKSVYLVSAGLSHMSR 383
           L+ T+G S K+VY V+  LS MS+
Sbjct: 337 LLGTYGYSNKNVYFVTVILSSMSK 360


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -1

Query: 436 SSTKSVYLVSAGLSHMSRAFLMIW 365
           +S KS+ L++AGL+H+ +  + ++
Sbjct: 549 NSVKSIILINAGLAHLGKVSVQVF 572


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 43  HLPXSHFTSCFGISSVPAGGWCGCKSXVSPPSRY 144
           HLP S       I S   GG+ G K   +PP  Y
Sbjct: 249 HLPSSSLPPLEAIPSHYTGGFMGIKKSEAPPVPY 282


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -2

Query: 438 GAQPNLFI--WYLPVYHIC 388
           GA+P+ F   WYL V+H C
Sbjct: 308 GAEPSAFATRWYLTVFHQC 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,404
Number of Sequences: 5004
Number of extensions: 51394
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)