Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_A13
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0941 + 33198528-33198778,33199216-33199288,33199405-331994... 80 2e-15
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984... 31 1.3
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506... 30 2.2
09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148... 29 3.9
01_05_0600 + 23566223-23566355,23567752-23567855,23567958-235680... 29 3.9
07_03_0846 - 21983581-21986055 29 5.1
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 28 6.8
05_03_0338 + 12652966-12653017,12653813-12653860,12653924-126540... 28 6.8
12_01_1054 + 10847342-10847543,10847627-10847962,10848557-108488... 28 9.0
09_04_0668 + 19325747-19325785,19325825-19325881,19326361-193264... 28 9.0
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 28 9.0
06_03_1466 + 30350112-30350978 28 9.0
06_03_0482 + 21307314-21307458,21308747-21308850,21308924-213090... 28 9.0
03_02_0842 + 11682332-11683802,11683858-11683940,11684751-116865... 28 9.0
>01_06_0941 +
33198528-33198778,33199216-33199288,33199405-33199452,
33199554-33199648,33200552-33200702
Length = 205
Score = 79.8 bits (188), Expect = 2e-15
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 9/108 (8%)
Frame = +1
Query: 277 ESLCDFFEQLIE--DAPNLKGADVTYSDGVLTISLGKHGTYVINRQIPNKQIWLSSPT-- 444
E++ D E+L E D+ + G D+ Y + VLT+ LG+ GTYV+N+Q PN+QIWLSSP
Sbjct: 98 ETIHDLLEKLEEYGDSLQMDGFDIDYGNQVLTLRLGELGTYVVNKQAPNRQIWLSSPVRL 157
Query: 445 -----SGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 573
SGP R+D WIY+ G L +LL++EI + V+L
Sbjct: 158 STFVRSGPSRFDWDAP-TNCWIYRRTGANLVELLEKEIGELCGTPVEL 204
>04_04_0850 -
28697462-28697684,28697894-28697971,28698103-28698495,
28698590-28698893,28698978-28699188,28699943-28700674
Length = 646
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Frame = +1
Query: 409 IPNKQIWLSSPTSGPKRYDLVLEGGGYWIYKH----DGVTLH--KLLQQEISVIVKDKVD 570
I + Q W ++ P+ YDL+ + +YK D + L ++L+ E +VI++D VD
Sbjct: 541 IGSYQDWCEGMSTYPRTYDLIHADSVFTLYKDRCQMDNILLEMDRILRPEGTVIIRDDVD 600
Query: 571 L 573
+
Sbjct: 601 M 601
>02_05_0288 -
27549718-27549940,27550025-27550102,27550282-27550674,
27550752-27551347,27552232-27552978
Length = 678
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Frame = +1
Query: 409 IPNKQIWLSSPTSGPKRYDLVLEGGGYWIYKH----DGVTLH--KLLQQEISVIVKDKVD 570
I + Q W ++ P+ YDL+ + +YK+ D + L ++L+ E +VI++D VD
Sbjct: 573 IGSYQDWCEGMSTYPRTYDLIHADSVFTLYKNRCEMDIILLEMDRILRPEGTVIIRDDVD 632
Query: 571 L 573
+
Sbjct: 633 M 633
>09_04_0117 +
14813472-14814113,14814194-14814404,14814552-14814846,
14815059-14815448,14815528-14815605,14815692-14815926
Length = 616
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Frame = +1
Query: 427 WLSSPTSGPKRYDLVLEGGGYWIYKH----DGVTLH--KLLQQEISVIVKDKVDL 573
W + ++ P+ YDL+ G + +YK+ + + L ++L+ E +VI++D VD+
Sbjct: 513 WCEAFSTYPRTYDLIHASGLFTLYKNKCNMEDILLEMDRVLRPEGAVIMRDDVDI 567
>01_05_0600 +
23566223-23566355,23567752-23567855,23567958-23568053,
23568134-23568253,23568543-23568710,23568921-23569012,
23569739-23569857,23570547-23570670,23570801-23570924,
23571291-23571359,23571470-23571561,23571645-23571722,
23571927-23571994,23572073-23572209
Length = 507
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 280 SLCDFFEQLIE--DAPNLKGADVTYSDGVLTISLGKHGTYVINRQIPNKQIWLSSPTSGP 453
+LCD Q+ E +AP + + I K G ++++R ++W + SGP
Sbjct: 311 ALCDTHSQVFEQHEAPGSRSFFTEIIASISDIKFSKDGRHILSRDYMTLKLWDINMNSGP 370
>07_03_0846 - 21983581-21986055
Length = 824
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 334 ADVTYSDGVL-TISLGKHGTYVINRQIPNKQIWLSSPTSGPKRYDLVLEGGG 486
+DV SD ++S+G G V+ Q N+Q+W ++ + V++ GG
Sbjct: 81 SDVPVSDPTTASLSIGSDGNLVLLDQSKNRQLWSTNVSVASNSTVAVIQDGG 132
>10_08_1005 - 22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 322 NLKGADVTYSDGVLTISLGKHGTYVINRQIPNKQIWLSSP 441
NL G+D T DG L++SLG G N+ + KQ P
Sbjct: 1511 NLTGSD-TGDDGPLSLSLGLPGVVTSNQALEMKQFLPEKP 1549
>05_03_0338 +
12652966-12653017,12653813-12653860,12653924-12654080,
12654104-12654206,12654866-12655111,12655802-12656204,
12656257-12656354,12656460-12657044,12657120-12657566
Length = 712
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 454 KRYDLVLEGGGYWIYKHDGVTLH-KLLQQEISV 549
K YD++L G WIY+H +TL K ++ +I+V
Sbjct: 564 KGYDIIL--GANWIYQHSPITLDLKQIKLDITV 594
>12_01_1054 +
10847342-10847543,10847627-10847962,10848557-10848807,
10849226-10849313,10849548-10849723,10850597-10850656,
10850811-10850901,10851563-10851639,10852565-10852653,
10852950-10853061,10853623-10853725,10854892-10855121
Length = 604
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +1
Query: 58 HFTSCFGISSVPAGGWCGCKSXVSPPSR 141
H+T + + GGWCG K + R
Sbjct: 557 HYTGADDLKKIVNGGWCGWKKSIDSKGR 584
>09_04_0668 +
19325747-19325785,19325825-19325881,19326361-19326490,
19328303-19328352,19328645-19328741,19328834-19328902,
19328986-19329078,19329194-19329317,19329904-19329973,
19330046-19330087,19330245-19330373,19330468-19330575,
19330729-19330771,19330840-19330878,19331076-19331200,
19331397-19331409,19331504-19331574,19331849-19331936,
19332515-19332600,19332708-19332762,19332859-19333028,
19333157-19333273,19333392-19333453,19333734-19333793,
19333855-19333921
Length = 667
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -3
Query: 599 QTKLCEHFDKSTLSLTITDISC-CRSLWSVTP 507
+TK E ++ +L L +TD SC R +WS++P
Sbjct: 18 KTKEAEITEQDSLLLILTDFSCGFRRVWSMSP 49
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 283 LCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKHGTYVINRQIPNKQIWLSSPT-SGPKR 459
LC F + + + GA T+ D V + K V+N + N S+ T S P
Sbjct: 144 LCFFLGNAVAGSMYVLGAVETFLDAVPSAGFFKESVTVVNNTLVNGTATASTATISTPSL 203
Query: 460 YDLVLEG 480
+DL + G
Sbjct: 204 HDLQVYG 210
>06_03_1466 + 30350112-30350978
Length = 288
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = -1
Query: 499 CRSSSLLPRELSHSALVQTW-----GSSTKSVYLVSAGLSHM 389
CRS LL SH A V++W G ++ S VSAGL+H+
Sbjct: 37 CRSHPLLSHLQSHIAAVRSWLLQDHGDASASA-SVSAGLAHI 77
>06_03_0482 +
21307314-21307458,21308747-21308850,21308924-21309019,
21309264-21309383,21310049-21310246,21310392-21310483,
21310848-21310966,21311722-21311845,21312016-21312139,
21312998-21313066,21313146-21313237,21313330-21313407,
21313677-21313744,21313842-21313978
Length = 521
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 280 SLCDFFEQLIED--APNLKGADVTYSDGVLTISLGKHGTYVINRQIPNKQIWLSSPTSGP 453
+LCD ++ E+ AP + + I + G Y+++R ++W + SGP
Sbjct: 325 ALCDNHSKIFEEHEAPGSRSFFTEIIASISDIKFSRDGRYILSRDYMTLKLWDLNMDSGP 384
>03_02_0842 +
11682332-11683802,11683858-11683940,11684751-11686553,
11687783-11688633,11689230-11689299,11689597-11689641
Length = 1440
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 277 ESLCDFFEQL-IEDAPNLKGADVTYSDGVLTISLG 378
++L +F + + + P LKGAD+ Y D VL + G
Sbjct: 258 DNLQNFLKMIAVSYVPALKGADIKYDDPVLFLDAG 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,844,768
Number of Sequences: 37544
Number of extensions: 349018
Number of successful extensions: 974
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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