Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_A13
(742 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC048097-1|AAH48097.1| 210|Homo sapiens frataxin protein. 119 1e-26
BC023633-1|AAH23633.1| 210|Homo sapiens frataxin protein. 119 1e-26
AL162730-2|CAH71829.1| 210|Homo sapiens frataxin protein. 119 1e-26
U43752-1|AAA98508.1| 210|Homo sapiens frataxin protein. 117 4e-26
U43747-1|AAA98510.1| 210|Homo sapiens frataxin protein. 117 4e-26
U43753-1|AAA98509.1| 171|Homo sapiens frataxin protein. 73 1e-12
U93173-1|AAD00734.1| 49|Homo sapiens frataxin protein. 49 2e-05
BC044240-1|AAH44240.1| 502|Homo sapiens immunoglobulin-like dom... 30 7.6
AY672839-1|AAT77414.1| 457|Homo sapiens immunoglobulin-like dom... 30 7.6
AY672838-1|AAT77413.1| 514|Homo sapiens immunoglobulin-like dom... 30 7.6
AY672837-1|AAT77412.1| 546|Homo sapiens immunoglobulin-like dom... 30 7.6
>BC048097-1|AAH48097.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 119 bits (286), Expect = 1e-26
Identities = 57/109 (52%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +1
Query: 250 FEXACNEXLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKH-GTYVINRQIPNKQI 426
+E E L+SL +FFE L + + DV++ GVLT+ LG GTYVIN+Q PNKQI
Sbjct: 95 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 154
Query: 427 WLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 573
WLSSP+SGPKRYD G W+Y HDGV+LH+LL E++ +K K+DL
Sbjct: 155 WLSSPSSGPKRYDWT---GKNWVYSHDGVSLHELLAAELTKALKTKLDL 200
>BC023633-1|AAH23633.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 119 bits (286), Expect = 1e-26
Identities = 57/109 (52%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +1
Query: 250 FEXACNEXLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKH-GTYVINRQIPNKQI 426
+E E L+SL +FFE L + + DV++ GVLT+ LG GTYVIN+Q PNKQI
Sbjct: 95 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 154
Query: 427 WLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 573
WLSSP+SGPKRYD G W+Y HDGV+LH+LL E++ +K K+DL
Sbjct: 155 WLSSPSSGPKRYDWT---GKNWVYSHDGVSLHELLAAELTKALKTKLDL 200
>AL162730-2|CAH71829.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 119 bits (286), Expect = 1e-26
Identities = 57/109 (52%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +1
Query: 250 FEXACNEXLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKH-GTYVINRQIPNKQI 426
+E E L+SL +FFE L + + DV++ GVLT+ LG GTYVIN+Q PNKQI
Sbjct: 95 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 154
Query: 427 WLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 573
WLSSP+SGPKRYD G W+Y HDGV+LH+LL E++ +K K+DL
Sbjct: 155 WLSSPSSGPKRYDWT---GKNWVYSHDGVSLHELLAAELTKALKTKLDL 200
>U43752-1|AAA98508.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 117 bits (282), Expect = 4e-26
Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +1
Query: 250 FEXACNEXLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKH-GTYVINRQIPNKQI 426
+E E L+SL +FFE L + + DV++ GVLT+ LG GTYVIN+Q PNKQI
Sbjct: 95 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 154
Query: 427 WLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 573
WLSSP+SGPKRYD G W++ HDGV+LH+LL E++ +K K+DL
Sbjct: 155 WLSSPSSGPKRYDWT---GKNWVFSHDGVSLHELLAAELTKALKTKLDL 200
>U43747-1|AAA98510.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 117 bits (282), Expect = 4e-26
Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +1
Query: 250 FEXACNEXLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKH-GTYVINRQIPNKQI 426
+E E L+SL +FFE L + + DV++ GVLT+ LG GTYVIN+Q PNKQI
Sbjct: 95 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 154
Query: 427 WLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 573
WLSSP+SGPKRYD G W++ HDGV+LH+LL E++ +K K+DL
Sbjct: 155 WLSSPSSGPKRYDWT---GKNWVFSHDGVSLHELLAAELTKALKTKLDL 200
>U43753-1|AAA98509.1| 171|Homo sapiens frataxin protein.
Length = 171
Score = 72.5 bits (170), Expect = 1e-12
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = +1
Query: 250 FEXACNEXLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKH-GTYVINRQIPNKQI 426
+E E L+SL +FFE L + + DV++ GVLT+ LG GTYVIN+Q PNKQI
Sbjct: 95 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 154
Query: 427 WLSSPT 444
WLSSP+
Sbjct: 155 WLSSPS 160
>U93173-1|AAD00734.1| 49|Homo sapiens frataxin protein.
Length = 49
Score = 49.2 bits (112), Expect = 2e-05
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +1
Query: 448 GPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 573
GPKRYD G W+Y HDGV+LH+LL E++ +K K+DL
Sbjct: 1 GPKRYDWT---GKNWVYSHDGVSLHELLAAELTKALKTKLDL 39
>BC044240-1|AAH44240.1| 502|Homo sapiens immunoglobulin-like domain
containing receptor 1 protein.
Length = 502
Score = 30.3 bits (65), Expect = 7.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 109 RTSHRPGRMRCRSMT*NETPEDDFEMHDXRRCHR 8
R SH P R RC+ +P + + H RR HR
Sbjct: 389 RPSHPPFRSRCQERPRRPSPRESTQRHGRRRRHR 422
>AY672839-1|AAT77414.1| 457|Homo sapiens immunoglobulin-like
domain-containing receptor 1 beta protein.
Length = 457
Score = 30.3 bits (65), Expect = 7.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 109 RTSHRPGRMRCRSMT*NETPEDDFEMHDXRRCHR 8
R SH P R RC+ +P + + H RR HR
Sbjct: 344 RPSHPPFRSRCQERPRRPSPRESTQRHGRRRRHR 377
>AY672838-1|AAT77413.1| 514|Homo sapiens immunoglobulin-like
domain-containing receptor 1 alpha' protein.
Length = 514
Score = 30.3 bits (65), Expect = 7.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 109 RTSHRPGRMRCRSMT*NETPEDDFEMHDXRRCHR 8
R SH P R RC+ +P + + H RR HR
Sbjct: 401 RPSHPPFRSRCQERPRRPSPRESTQRHGRRRRHR 434
>AY672837-1|AAT77412.1| 546|Homo sapiens immunoglobulin-like
domain-containing receptor 1 alpha protein.
Length = 546
Score = 30.3 bits (65), Expect = 7.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 109 RTSHRPGRMRCRSMT*NETPEDDFEMHDXRRCHR 8
R SH P R RC+ +P + + H RR HR
Sbjct: 433 RPSHPPFRSRCQERPRRPSPRESTQRHGRRRRHR 466
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,318,152
Number of Sequences: 237096
Number of extensions: 1967977
Number of successful extensions: 3797
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3786
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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