Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A13
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53332-10|AAK31530.1|  136|Caenorhabditis elegans Frataxin (invo...   112   2e-25
AY048153-1|AAL05950.1|  136|Caenorhabditis elegans frataxin prot...   112   2e-25
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p...    31   0.65 
U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    28   8.0  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    28   8.0  

>U53332-10|AAK31530.1|  136|Caenorhabditis elegans Frataxin
           (involved in human friedrich'sataxia) homolog protein 1
           protein.
          Length = 136

 Score =  112 bits (270), Expect = 2e-25
 Identities = 60/127 (47%), Positives = 81/127 (63%), Gaps = 2/127 (1%)
 Frame = +1

Query: 196 FNNRSLSDNIRNEXEPLVFEXACNEXLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISL 375
           F  RS S  I ++ E   +E A +  LE L D+F+Q+ +  P  +  DV+++ GVLT+++
Sbjct: 10  FVRRSFSSRIFSQNE---YETAADSTLERLSDYFDQIADSFPVSEQFDVSHAMGVLTVNV 66

Query: 376 GKH-GTYVINRQIPNKQIWLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEI-SV 549
            K  GTYVIN+Q PNKQIWLSSP SGPKRYD  LE  G W Y HDG  L  LL +E   +
Sbjct: 67  SKSVGTYVINKQSPNKQIWLSSPMSGPKRYD--LEEEGKWTYAHDGEQLDSLLNREFRKI 124

Query: 550 IVKDKVD 570
           +  D++D
Sbjct: 125 LADDRID 131


>AY048153-1|AAL05950.1|  136|Caenorhabditis elegans frataxin
           protein.
          Length = 136

 Score =  112 bits (270), Expect = 2e-25
 Identities = 60/127 (47%), Positives = 81/127 (63%), Gaps = 2/127 (1%)
 Frame = +1

Query: 196 FNNRSLSDNIRNEXEPLVFEXACNEXLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISL 375
           F  RS S  I ++ E   +E A +  LE L D+F+Q+ +  P  +  DV+++ GVLT+++
Sbjct: 10  FVRRSFSSRIFSQNE---YETAADSTLERLSDYFDQIADSFPVSEQFDVSHAMGVLTVNV 66

Query: 376 GKH-GTYVINRQIPNKQIWLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEI-SV 549
            K  GTYVIN+Q PNKQIWLSSP SGPKRYD  LE  G W Y HDG  L  LL +E   +
Sbjct: 67  SKSVGTYVINKQSPNKQIWLSSPMSGPKRYD--LEEEGKWTYAHDGEQLDSLLNREFRKI 124

Query: 550 IVKDKVD 570
           +  D++D
Sbjct: 125 LADDRID 131


>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
           protein F45G2.2a protein.
          Length = 1235

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 259 ACNEXLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKHGTY 393
           +C E +E        L E+    K +D+TY D +LT  LGKH  +
Sbjct: 513 SCIELIEKPLGIVSMLDEECIVPKASDMTYVDKLLTQHLGKHPNF 557


>U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical
           protein F22A3.6a protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -1

Query: 343 LRQLLSNSVHLR-LTAQKNHTATLRXR-CKPLQI-LEV-PLHCGYYQISFGY 200
           ++ LL  SV +  ++A   H   +R   CKP+   ++V  L CGYYQI  GY
Sbjct: 3   VKSLLLLSVAIAYVSADCLHCICMRESGCKPIGCHMDVGSLSCGYYQIKIGY 54


>Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical
           protein T08G3.5 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +2

Query: 185 LVVVLITEAYLIISAMKXNL 244
           L+VVLI E+YLI SA+  NL
Sbjct: 251 LIVVLIPESYLIYSAVTKNL 270


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical
           protein K12F2.1 protein.
          Length = 1969

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 259 ACNEXLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKHGTY 393
           AC E +E        L E+    K  D+TY+  +L   LGKH  +
Sbjct: 523 ACIELIEKPLGIISILDEECIVPKATDMTYAQKLLDQHLGKHPNF 567


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain
           3 protein.
          Length = 1969

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 259 ACNEXLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKHGTY 393
           AC E +E        L E+    K  D+TY+  +L   LGKH  +
Sbjct: 523 ACIELIEKPLGIISILDEECIVPKATDMTYAQKLLDQHLGKHPNF 567


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,075,768
Number of Sequences: 27780
Number of extensions: 296562
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)