Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A10
         (831 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.9  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.9  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   8.6  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   8.6  
AJ618927-1|CAF02006.1|  235|Anopheles gambiae odorant-binding pr...    23   8.6  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -2

Query: 164 FDFTLNMRCLSSLIGL---CMPKALLRVLTVFMQALNNGVISILRGFVYVLNVFFL 6
           F+ T+  + L   + +   CM  + L VLT ++ + +   +++    +  L+VFFL
Sbjct: 235 FNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFL 290


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -2

Query: 164 FDFTLNMRCLSSLIGL---CMPKALLRVLTVFMQALNNGVISILRGFVYVLNVFFL 6
           F+ T+  + L   + +   CM  + L VLT ++ + +   +++    +  L+VFFL
Sbjct: 235 FNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFL 290


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
            gambiae T1 retroposon. ).
          Length = 975

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 469  YALYKQLLNKHQLNLRLSPYIP*FVGSL*FFDYHS*TLLAGVSM 338
            Y    QL N H L+ R       F+G L   D  +  LL+ +S+
Sbjct: 871  YETRLQLFNLHSLSFRRQVSQACFIGGLLLSDTDAPDLLSSISL 914


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -2

Query: 164 FDFTLNMRCLSSLIGL---CMPKALLRVLTVFMQALNNGVISILRGFVYVLNVFFL 6
           F+ T+  + L   + L   CM  + L +L  ++ + +   +S+    +  L VFFL
Sbjct: 231 FNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFL 286


>AJ618927-1|CAF02006.1|  235|Anopheles gambiae odorant-binding
           protein OBPjj7a protein.
          Length = 235

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 67  KACIKTVKTRNKAFGIHSPI 126
           K C   V+ +NKA G + P+
Sbjct: 80  KQCFMEVRNKNKADGAYEPV 99


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,896
Number of Sequences: 2352
Number of extensions: 12450
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 87651612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)