Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A09
         (900 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q95R29 Cluster: HL03650p; n=2; Sophophora|Rep: HL03650p...    53   1e-05
UniRef50_Q22AF6 Cluster: SLEI family protein; n=4; Tetrahymena t...    41   0.049
UniRef50_A5UUA0 Cluster: Alpha/beta hydrolase fold; n=2; Roseifl...    38   0.26 
UniRef50_A1ZZH4 Cluster: Putative anti-sigma factor; n=1; Micros...    33   9.9  
UniRef50_Q80X59 Cluster: Transmembrane and coiled-coil domain-co...    33   9.9  
UniRef50_P38249 Cluster: Eukaryotic translation initiation facto...    33   9.9  

>UniRef50_Q95R29 Cluster: HL03650p; n=2; Sophophora|Rep: HL03650p -
           Drosophila melanogaster (Fruit fly)
          Length = 264

 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 21/44 (47%), Positives = 36/44 (81%)
 Frame = +3

Query: 294 ILELAWKTVALMHKNRLIQQKIIDLQKETSQYIQSVMSNPENRR 425
           +L +A KT+ L+ +N+L+Q+++  LQ ETS++I SV++NPENR+
Sbjct: 201 LLSIAIKTIKLVQRNKLLQKRLAQLQLETSEFIASVLANPENRQ 244


>UniRef50_Q22AF6 Cluster: SLEI family protein; n=4; Tetrahymena
            thermophila SB210|Rep: SLEI family protein - Tetrahymena
            thermophila SB210
          Length = 2342

 Score = 40.7 bits (91), Expect = 0.049
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +3

Query: 327  MHKNRLIQQKIIDLQKETSQYIQSVMSNPENRRRYMEHVRLYGAQPTQLKLLAAEKNVQA 506
            + K   I+QKI    ++  QY+Q ++ NPE+ + Y E  + Y +Q    K +   K V  
Sbjct: 861  LEKIEKIEQKIDSKNEKLEQYLQEIIKNPESAKSYFELGQFYQSQQNNKKAIDCLKKV-I 919

Query: 507  KVEPK 521
            +++PK
Sbjct: 920  EIDPK 924


>UniRef50_A5UUA0 Cluster: Alpha/beta hydrolase fold; n=2;
           Roseiflexus|Rep: Alpha/beta hydrolase fold - Roseiflexus
           sp. RS-1
          Length = 287

 Score = 38.3 bits (85), Expect = 0.26
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
 Frame = +3

Query: 303 LAWKTVALMHKNRLIQQKIIDLQKETSQYIQSVMSN-------PENRRRYMEHVRLYGAQ 461
           LA +  A++   R +QQ   DL+     +I  +M N       P  R+R M++ RL GA+
Sbjct: 141 LAQRAAAILPAKRAVQQG--DLEHGARLFIDGMMGNGVFDQLPPSARQRIMDNARLIGAE 198

Query: 462 PTQLKLLAAE 491
           PT++  + AE
Sbjct: 199 PTEIDAMGAE 208


>UniRef50_A1ZZH4 Cluster: Putative anti-sigma factor; n=1;
           Microscilla marina ATCC 23134|Rep: Putative anti-sigma
           factor - Microscilla marina ATCC 23134
          Length = 328

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 24/78 (30%), Positives = 40/78 (51%)
 Frame = +3

Query: 279 AQNRVILELAWKTVALMHKNRLIQQKIIDLQKETSQYIQSVMSNPENRRRYMEHVRLYGA 458
           A NR +  LAWKT AL+ K   ++Q + DLQ+    Y  ++   P  R+++  +   +  
Sbjct: 245 ALNRDLNYLAWKTGALVFKKATMEQIVADLQR---HYQVNISCAPALRQQFGFN-GTFKD 300

Query: 459 QPTQLKLLAAEKNVQAKV 512
           QP +  L   E  ++ KV
Sbjct: 301 QPLKEVLQVLEATLEVKV 318


>UniRef50_Q80X59 Cluster: Transmembrane and coiled-coil
           domain-containing protein 5B; n=4; Euarchontoglires|Rep:
           Transmembrane and coiled-coil domain-containing protein
           5B - Mus musculus (Mouse)
          Length = 307

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 18/80 (22%), Positives = 45/80 (56%)
 Frame = +3

Query: 276 AAQNRVILELAWKTVALMHKNRLIQQKIIDLQKETSQYIQSVMSNPENRRRYMEHVRLYG 455
           A +   + +L  ++  L  KN+ + + +++LQK+ S+ ++++ S+PE  ++ +   ++  
Sbjct: 85  AQKETALKDLELESAKLEKKNKTLSKNVMELQKKISKGLKNIASDPETLKKKVTEFKVKL 144

Query: 456 AQPTQLKLLAAEKNVQAKVE 515
            + T+      EK + AK+E
Sbjct: 145 QKSTE-SCAQQEKEI-AKME 162


>UniRef50_P38249 Cluster: Eukaryotic translation initiation factor 3
           110 kDa subunit; n=5; Saccharomycetales|Rep: Eukaryotic
           translation initiation factor 3 110 kDa subunit -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 964

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
 Frame = +3

Query: 333 KNRLIQQKIIDLQKETSQYIQSVMSNPENRRRYMEHVRLYG---AQPTQLKLLAAEKNVQ 503
           +  LI++   DL+K +    + V  + E ++++MEH  L+    A+  Q ++L  +  ++
Sbjct: 583 RETLIKKNKDDLEKISKIVDERVKRSQEQKQKHMEHAALHAEQDAEVRQQRILEEKAAIE 642

Query: 504 AKVEPKA*ARI 536
           AK+E +A  R+
Sbjct: 643 AKLEEEAHRRL 653


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 768,449,727
Number of Sequences: 1657284
Number of extensions: 14273209
Number of successful extensions: 36192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36181
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)