Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A09
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   4.8  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   8.4  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    26   8.4  

>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 279 AQNRVILELAWKTVALMHKNRLIQQKIIDLQKETSQYIQSVMSN-PENRRR 428
           + NR+I     K    MH+ R I   +ID++   S  + S   N PE  +R
Sbjct: 167 SSNRIIKSPGIKEDDYMHRGRSISSPMIDVEHINSTAVPSKTKNLPEKPKR 217


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 348  QQKIIDLQKETSQYIQSVMSNPENRRRYMEHV 443
            + K+  +  ETS  +Q +  NPE  R+ ME++
Sbjct: 999  RSKLHGIWHETSYKMQEIRDNPECARQEMENI 1030


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 290 RHLRARLEDRSADAQEQIDPTED 358
           RHL + +E+  A  QE+  PT+D
Sbjct: 163 RHLASEIEEEFASRQEEEAPTDD 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,857
Number of Sequences: 5004
Number of extensions: 61979
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)