Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A09
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0916 + 20794240-20794246,20794585-20796545                       34   0.18 
05_07_0161 + 28089538-28089856,28089921-28090021                       29   6.7  
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423...    28   8.8  

>04_03_0916 + 20794240-20794246,20794585-20796545
          Length = 655

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 455 CATYATQAISSRK-ECTGQSGAQSVSPNLILKVRKIYEQQKTKWRKSFVIYILITCF*LK 631
           C+ +  + ++ RK +CTG S     + ++ L  +++Y Q+  K  +  VI +L  CF L 
Sbjct: 248 CSVWHNELLNIRKNQCTGSSNTDGETFHIRLAAQELYSQEVNK--RGMVIGVLSACFALF 305

Query: 632 RLVL 643
            L+L
Sbjct: 306 GLLL 309


>05_07_0161 + 28089538-28089856,28089921-28090021
          Length = 139

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 440 RPFVRCATYATQAISSRKECTGQSG---AQSVSPNLILKVRKIYEQQKTKWRK 589
           R  +R      Q ++SR E  G+ G   A SV    +  V++  E +KTKWR+
Sbjct: 14  RMLLRSEHDRVQRMASRLEGVGKGGHCVASSVRERELRSVKERKEVEKTKWRR 66


>01_01_0571 -
           4233769-4234239,4234340-4234378,4234712-4234839,
           4235329-4235470,4235519-4235905,4236045-4236230,
           4236382-4236659,4236757-4236883,4237270-4237442,
           4237610-4237657,4237734-4237767,4237837-4237965,
           4238865-4238960,4239419-4239485,4240030-4240085,
           4240522-4240617,4241127-4242222,4243221-4243402
          Length = 1244

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 608 KCK*QMISAILFFVVHRFYELSELDS 531
           KCK   +  +LFF V +FYEL E+D+
Sbjct: 414 KCK--YMDVVLFFKVGKFYELYEVDA 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,348,957
Number of Sequences: 37544
Number of extensions: 376974
Number of successful extensions: 889
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)