Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A09
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    29   3.4  
AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...    29   3.4  

>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -3

Query: 535 IRAHALGSTLACTFFSAANSLSCVGCAPYKRTCSI*RLLFSGLLIT 398
           + A A  ++ AC F SAA SL C  C P  ++ +  R++++ LL T
Sbjct: 5   LAAPACAASSACCFGSAACSLCCSIC-PTTKSSTTTRIMYAFLLFT 49


>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -3

Query: 535 IRAHALGSTLACTFFSAANSLSCVGCAPYKRTCSI*RLLFSGLLIT 398
           + A A  ++ AC F SAA SL C  C P  ++ +  R++++ LL T
Sbjct: 5   LAAPACAASSACCFGSAACSLCCSIC-PTTKSSTTTRIMYAFLLFT 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,197,063
Number of Sequences: 27780
Number of extensions: 358268
Number of successful extensions: 1008
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)