Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A08
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157...    31   0.46 
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053...    29   1.4  
02_05_1341 - 35801987-35802472                                         27   5.6  
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350...    27   5.6  
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522...    27   9.8  
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134...    27   9.8  

>08_01_0189 +
           1578935-1578950,1579227-1579390,1579493-1579605,
           1579850-1580399,1580514-1580813,1581093-1581133,
           1581359-1581606,1581983-1582086,1582177-1582323
          Length = 560

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 195 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDY 293
           R  +V WN +   E  EAYR K+     P+RD+
Sbjct: 526 RKYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDF 558


>02_05_0331 +
           28003454-28003912,28004649-28004873,28005017-28005370,
           28005673-28005702,28006869-28007342
          Length = 513

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 153 GCGGAVFYTLRLALRNPDVSWNKKTNPEP 239
           GC  AV  TL  AL   +    KKTNP+P
Sbjct: 385 GCNAAVMSTLLSALVAVEACLGKKTNPQP 413


>02_05_1341 - 35801987-35802472
          Length = 161

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 157 VVELCSILCVWLCVILMYLGTRRPTLNHGRLTGTSSTSSILPSETT 294
           VV L S+LC  +CV  + L  R      G  T T++T++  P+ T+
Sbjct: 2   VVILASLLCALICVAGLALVARCACRRRGAAT-TTTTTTTTPAATS 46


>02_01_0487 +
           3503003-3503037,3505802-3505833,3506012-3506127,
           3506227-3506437,3506555-3506792,3507075-3507252,
           3507962-3508079,3508167-3508373,3509134-3509234
          Length = 411

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 171 TQLHHILSPHIHXRGIKALCFFKLERLSPCILNYLIA 61
           T LH +++PHI  R IKA      + L+P I ++ +A
Sbjct: 157 TYLHEVVNPHIVHRDIKASNILLDKDLTPKISDFGLA 193


>09_06_0055 -
           20550889-20551531,20551612-20551889,20552035-20552203,
           20552397-20552534,20553945-20553997,20554521-20554574,
           20556062-20556295,20556399-20556986,20557065-20557419,
           20557494-20557694,20557925-20557998,20558114-20558254,
           20558611-20558670,20558750-20558806,20559281-20559318,
           20559419-20559578
          Length = 1080

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 183 AEYRTQLHHILSPHIHXRGIKA 118
           AE  + LHH  SPHI  R IKA
Sbjct: 863 AEGLSYLHHEASPHIIHRDIKA 884


>07_03_1389 +
           26212117-26212119,26212721-26212875,26213402-26213479,
           26214211-26214375,26214453-26214554,26214661-26214786,
           26215454-26215490
          Length = 221

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 195 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESP 311
           R+P  S +   +P P  A R  + + YSP+   S+  SP
Sbjct: 158 RSPYRSPSYSRSPSPRYARRRMRERSYSPVESRSRSRSP 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,471,363
Number of Sequences: 37544
Number of extensions: 215586
Number of successful extensions: 524
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)