Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_A08
(464 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 2.9
AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical ... 28 2.9
Z92829-5|CAB07345.1| 324|Caenorhabditis elegans Hypothetical pr... 28 3.8
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 3.8
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 28 3.8
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 6.6
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 6.6
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 6.6
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 6.6
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 217 TRRPT---LNHGRLTGTSSTSSILPSETTLRRNLLPPNT 324
T+RPT L G + +SST S S TT LPP T
Sbjct: 950 TQRPTSPILTSGATSTSSSTESTTTSPTTSTTTTLPPTT 988
>AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical
protein Y50D7A.1 protein.
Length = 791
Score = 28.3 bits (60), Expect = 2.9
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -1
Query: 329 SLVFGGRRFLLRVVSDGRIELVLL-VPVSLPWFRVGLLVPRYIRITQSQTQSIEHSSTTS 153
SLV G + +L +D R VP L +F RY+ T + SI HS+ S
Sbjct: 200 SLVTWGTQLILFGGNDNRRRCPFANVPPELHYFDTSTSTWRYVPATGNSPSSIGHSAVVS 259
Query: 152 YPHTYIXEGSKPYASSNL 99
+ ++ G P+ + L
Sbjct: 260 GDYMFVY-GGWPFIHNEL 276
>Z92829-5|CAB07345.1| 324|Caenorhabditis elegans Hypothetical
protein F10A3.5 protein.
Length = 324
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 156 CGGAVFYTLRLALRNPDVSWNKKTNPEPWEAY--RNKQYKFYSPIRDYSKEESPAPKY 323
C A+++ L L +P +++ PE WE+Y + +Y + P Y+ + K+
Sbjct: 141 CNSAIWFFCFLVLNSPSPMKDEELFPEFWESYCLKPNEYTYTGPHYYYTDNSTGEWKF 198
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 177 TLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPK 320
+LR +L N T A RNKQ+ YS D S+ APK
Sbjct: 728 SLRCSLNNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPK 775
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 177 TLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPK 320
+LR +L N T A RNKQ+ YS D S+ APK
Sbjct: 786 SLRCSLNNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPK 833
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 246 AYRNKQYKFYSPIRDYSKEESPAPK 320
A RNKQ+ YS D S+ APK
Sbjct: 785 AVRNKQFNMYSENGDLSRPSDSAPK 809
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 246 AYRNKQYKFYSPIRDYSKEESPAPK 320
A RNKQ+ YS D S+ APK
Sbjct: 843 AVRNKQFNMYSENGDLSRPSDSAPK 867
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 246 AYRNKQYKFYSPIRDYSKEESPAPK 320
A RNKQ+ YS D S+ APK
Sbjct: 896 AVRNKQFNMYSENGDLSRPSDSAPK 920
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 246 AYRNKQYKFYSPIRDYSKEESPAPK 320
A RNKQ+ YS D S+ APK
Sbjct: 815 AVRNKQFNMYSENGDLSRPSDSAPK 839
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,070,211
Number of Sequences: 27780
Number of extensions: 186109
Number of successful extensions: 582
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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