Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A08
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   2.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 129 LXYVCVGIGCGGAVFYTLR 185
           L  VC+GI C G    T+R
Sbjct: 6   LLVVCLGIACQGITSVTVR 24


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 230 VGLLVPRYIRITQSQTQSIEHSSTTSYPHTYIXEGSKPYASSNLR 96
           VGL +PRY     S   +    +T+     +I + +K   S + R
Sbjct: 531 VGLKMPRYCLFGDSVNTASRMEATSQAMQIHISQSTKELLSPSYR 575


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 317 QILNCFSNIDQLYY 358
           Q+ +CF  +D+LY+
Sbjct: 49  QLHSCFQTMDRLYF 62


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 54  IRKNCPQTEYCCR 16
           ++K CPQ E C R
Sbjct: 262 LKKLCPQEEACFR 274


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 54  IRKNCPQTEYCCR 16
           ++K CPQ E C R
Sbjct: 177 LKKLCPQEEACFR 189


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 54  IRKNCPQTEYCCR 16
           ++K CPQ E C R
Sbjct: 496 LKKLCPQEEACFR 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,903
Number of Sequences: 438
Number of extensions: 2912
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)