Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A07
         (897 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CSQ5 Cluster: TRNA (Gm18) ribose methylase; trm3p; Sp...    33   7.5  
UniRef50_A6WGP6 Cluster: Putative uncharacterized protein; n=1; ...    33   9.9  

>UniRef50_Q5CSQ5 Cluster: TRNA (Gm18) ribose methylase; trm3p; SpoU
           superfamily-SPOUT methylase; n=3; Cryptosporidium|Rep:
           TRNA (Gm18) ribose methylase; trm3p; SpoU
           superfamily-SPOUT methylase - Cryptosporidium parvum
           Iowa II
          Length = 1808

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 7   LCSRNRPHA-FYDSSIKCRVTINKCANPELQTTPKEFHGVFNVLA*IDRLSYLKGKLGN 180
           L S N  +A  Y++ IK ++ IN C +PE+ T+ K +  +F +     RL  + G   +
Sbjct: 588 LFSTNEIYAVIYNNIIKHKLVINSCFDPEILTSSKTWFNIFQLGVGFGRLKQIFGSFSD 646


>UniRef50_A6WGP6 Cluster: Putative uncharacterized protein; n=1;
           Kineococcus radiotolerans SRS30216|Rep: Putative
           uncharacterized protein - Kineococcus radiotolerans
           SRS30216
          Length = 168

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 326 SERPHGHGPPSRLFRPQSSDASRFH 400
           ++RP GH PPSR  RP+   ASR H
Sbjct: 126 AQRPGGHPPPSRHPRPEPGSASRRH 150


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 889,523,504
Number of Sequences: 1657284
Number of extensions: 18276958
Number of successful extensions: 37543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37539
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)