Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A07
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    29   0.68 
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   2.1  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   4.8  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    26   6.3  

>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 348 PCPCGLSLCRTTSNYLPAVITIRCSE-HRIVTNTQEAQPPVSGRQHKAAHDLHGPN 184
           PC CG  +CR   +++   +  RC    R+ T       PV+  + K   DLH  N
Sbjct: 34  PCQCGYRVCRFCWHHIKEDLNGRCPACRRLYTEENVQWRPVTAEEWKM--DLHRKN 87


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 696 MRRLRLXFIYLIPFDYSC*CHCVLVCLRPAQRVEYGDRD-FXTSLISFAH 842
           M+RLRL  IY   FD     +  L   + AQ   Y  RD   TS+  FA+
Sbjct: 377 MKRLRLIAIYAPRFDDGNVTYAQLASRKLAQLFNYSSRDTAITSIYQFAN 426


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 739 SNGIKYMNXSRSLRIPQSHLSDKYSQLH 656
           +NG +YMN S S   PQS     Y + H
Sbjct: 510 ANGSRYMNPSTSRMTPQSPYMQNYYRPH 537


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 56  VE*RLTSVRTPSFKRLLKSFMVFLTF 133
           VE   T+    SF++ L+ F+VFLTF
Sbjct: 707 VETNKTNEAPSSFRKCLQQFLVFLTF 732


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 254 ILRKRSRRYQADNTRPPMISTDRIT 180
           I  KR++  + +N+ PP++ST+ IT
Sbjct: 390 IQNKRTKSIEENNSLPPIVSTNGIT 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,667,971
Number of Sequences: 5004
Number of extensions: 76380
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)