Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A07
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-19|CAD56260.1|  317|Caenorhabditis elegans Hypothetical p...    32   0.48 
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    31   1.5  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    31   1.5  
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    29   3.4  

>Z99281-19|CAD56260.1|  317|Caenorhabditis elegans Hypothetical
           protein Y57G11C.38 protein.
          Length = 317

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -1

Query: 402 LWNRDASLLCGRNNLDGGPCPCGLSLCRTTSNYLPAVITIRCSEHRIVT 256
           +W+RD    C  N L+   C C +++C    +  P + T   ++  ++T
Sbjct: 178 VWDRDTGSACKSNGLEPEVCTCSMNMCNVLLDPAPLMTTPVMNDPTLLT 226


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 390 DASLLCGRNNLDGGPCPCG 334
           DASL+ GRN   GG C CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 390 DASLLCGRNNLDGGPCPCG 334
           DASL+ GRN   GG C CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +3

Query: 195 GDHGRPCVVGLIPAAALPE 251
           G HG PC  GL PA A PE
Sbjct: 182 GAHGTPCAPGLDPARATPE 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,402,433
Number of Sequences: 27780
Number of extensions: 435075
Number of successful extensions: 903
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)