Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A06
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    29   0.78 
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    27   4.2  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   7.3  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   7.3  

>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 267 VYISDAVAHYDSTGHIREDTNVLLAEGDNGFIFHFIVRRDDLSD 136
           +YI  A A  D     R +  V+L EG NG +      R + SD
Sbjct: 180 IYIDSAKAMQDGVEFYRSENGVILTEGVNGLLSSKYFSRVETSD 223


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +1

Query: 661 LRSYIXIR---NSRPTLPDNLRFYFSSYYLKH 747
           + +Y+ +R   NS  T   ++ FY+ SYYLK+
Sbjct: 126 MNAYVGVRTFSNSLETTLTSIGFYYFSYYLKY 157


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = -3

Query: 389 LIISSWIQSPRNAFQGLLVPSILKF*KYTL 300
           ++ S  +Q+P+N+FQ L++ + LK+  +TL
Sbjct: 355 VVSSKILQNPQNSFQALII-AALKYDPFTL 383


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 661 LRSYIXIRNSRPTLPDNLRFYFSSYYLKHVGDIKVASGNKTV 786
           LR  + IRN  P L D+ + YF        G +K   G ++V
Sbjct: 123 LRMIVKIRNKDPDLYDSQQKYFDEVEKDVQGSLKSKDGFRSV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,017
Number of Sequences: 5004
Number of extensions: 61432
Number of successful extensions: 192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)