Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A02
         (896 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    26   0.35 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   9.9  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 814 SIVXLKKKTHNVHNLWS 864
           SI+ L ++T+NVH +WS
Sbjct: 279 SIIDLSQQTYNVHLMWS 295


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -2

Query: 193 SFSLVVLGTFPLIVMFLLAISLAIRILCL 107
           S ++ +LGT+   +MF++A S+ + ++ L
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVL 296


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -2

Query: 193 SFSLVVLGTFPLIVMFLLAISLAIRILCL 107
           S ++ +LGT+   +MF++A S+ + ++ L
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVL 296


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -2

Query: 193 SFSLVVLGTFPLIVMFLLAISLAIRILCL 107
           S ++ +LGT+   +MF++A S+ + ++ L
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVL 296


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = -2

Query: 196 SSFSLVVLGTFPLIVMFLLAISLAIRILCL 107
           +S ++ ++GT+   +MF++A S+ + ++ L
Sbjct: 267 TSDAVPLIGTYFNCIMFMVASSVVLTVVVL 296


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = -2

Query: 196 SSFSLVVLGTFPLIVMFLLAISLAIRILCL 107
           +S ++ ++GT+   +MF++A S+ + ++ L
Sbjct: 267 TSDAVPLIGTYFNCIMFMVASSVVLTVVVL 296


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 190 FSLVVLGTFPLIVMFLLAISLAIRILC 110
           F L    TF  +V  L+  SLAI +LC
Sbjct: 398 FRLSKTKTFCTLVTALVYCSLAIFVLC 424


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,146
Number of Sequences: 336
Number of extensions: 4613
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)