Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P23
         (735 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54C96 Cluster: Putative uncharacterized protein; n=1; ...    38   0.34 
UniRef50_A7QXG1 Cluster: Chromosome undetermined scaffold_222, w...    35   2.4  
UniRef50_Q8IBH8 Cluster: Putative uncharacterized protein PF07_0...    34   4.2  
UniRef50_Q5CW82 Cluster: Smc like ABC ATpase involved in DNA rep...    33   9.6  

>UniRef50_Q54C96 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 349

 Score = 37.5 bits (83), Expect = 0.34
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
 Frame = +3

Query: 345 DETKALHFFSTLNNITNDNINKISINANLKKKHLSIYSVTELVPIASISSTFESARLCEA 524
           D+ K L+F + LN I+N+N + I +  N  KK +    VTE++   ++ +  E   +   
Sbjct: 29  DQIKQLNFDTALNQISNNNYHLIKLLCNEAKKSIDSNLVTEIIKFINVIAN-EDKNIVSI 87

Query: 525 LL*LEHSTLSI---MLHNALLCCN*KTTKMIINNIFLQ*NHSPYFSLLKLN 668
           L+ +E     I    +    L  N  TT   +N IF   ++ P   LLKL+
Sbjct: 88  LIEMESFNWIIPNCFIVEETLSINYLTT---LNLIFSNFDNLPKKELLKLD 135


>UniRef50_A7QXG1 Cluster: Chromosome undetermined scaffold_222,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_222, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 1002

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
 Frame = -3

Query: 586 LQHKSALCSIMLNVECSNYSNAS--HNRALSKVLLILAIGTNSVTE*IDKCFFFKLALIE 413
           L + S+L S+ L   C N  N +   N  L   LLIL IG NS+ + I +  F +L+ ++
Sbjct: 320 LGNLSSLISLYL---CGNRLNGTLPSNLGLLSNLLILNIGNNSLADTISEVHFHRLSKLK 376

Query: 412 ILFILSLVILFNVE 371
            L++ S  ++  V+
Sbjct: 377 YLYVSSTSLILKVK 390


>UniRef50_Q8IBH8 Cluster: Putative uncharacterized protein
           PF07_0116; n=2; cellular organisms|Rep: Putative
           uncharacterized protein PF07_0116 - Plasmodium
           falciparum (isolate 3D7)
          Length = 1923

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +3

Query: 381 NNITNDNINKISINANLKKKHLSIYSVTELVPIASISSTFESARLCEAL 527
           NN  ND+ +  + N N+KKK++ +++++ L+   +  +  E  ++C  L
Sbjct: 653 NNNNNDSSSNNNNNNNIKKKYIIVFNLSGLIDFINKKNNLEKKKICVML 701


>UniRef50_Q5CW82 Cluster: Smc like ABC ATpase involved in DNA
           repair; n=2; Cryptosporidium|Rep: Smc like ABC ATpase
           involved in DNA repair - Cryptosporidium parvum Iowa II
          Length = 1314

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 18/63 (28%), Positives = 36/63 (57%)
 Frame = +3

Query: 276 QMHQQSALS*HSFI*Y*LFLRNYDETKALHFFSTLNNITNDNINKISINANLKKKHLSIY 455
           Q+  + + S  + I Y  +L N      +HFF +LN+I+ND ++ ++++   KKK + + 
Sbjct: 275 QLSNEISKSKQNEIKYIQYLLNKMGIYLIHFFQSLNDISNDKVSLLNLDER-KKKVIKVI 333

Query: 456 SVT 464
           + T
Sbjct: 334 TET 336


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,788,361
Number of Sequences: 1657284
Number of extensions: 9937833
Number of successful extensions: 21294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21253
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)