Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P23
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    29   0.91 
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   4.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   6.4  

>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +1

Query: 448 QFILSLSWYXXXXXXXXXXXXDCAKRCCSWNIQR*ALCCIMRSCAVIEKLPK*SLIIFSY 627
           +F +S+ WY             C ++  + ++++ AL C++   A   KL   S+I+ SY
Sbjct: 141 EFNMSI-WYVALHGIDSASALSCTEKNRALHLEKKALNCLLSYFAFKGKLDICSVILQSY 199

Query: 628 SRTTPHT 648
             + PH+
Sbjct: 200 QLSIPHS 206


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 426 NLKKKHLSIYSVTELVPIASISSTFESARLCEA 524
           N  K HLS   V  +VP ++  STFESA++ +A
Sbjct: 177 NGAKDHLS-NGVNTVVPDSTFRSTFESAQIPDA 208


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/95 (15%), Positives = 40/95 (42%)
 Frame = +3

Query: 333 LRNYDETKALHFFSTLNNITNDNINKISINANLKKKHLSIYSVTELVPIASISSTFESAR 512
           L + ++    +  S  ++++     ++S+ A     +  +Y   ++     +S++ +   
Sbjct: 689 LNSMNDGDLTYIHSNGSSLSGGQKQRVSL-ARALYSNAEVYIFDDIFSALDVSTSRKIYE 747

Query: 513 LCEALL*LEHSTLSIMLHNALLCCN*KTTKMIINN 617
            C     L+H T+ +  HN  LC       +++ N
Sbjct: 748 SCFLSTLLQHKTIILFTHNVSLCLPIAENVIVLKN 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,470
Number of Sequences: 5004
Number of extensions: 47268
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)