Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P22
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    27   1.6  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    26   3.6  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    26   4.8  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   6.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   6.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.4  
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.4  

>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 441 FREIFPLDSGCSSVISENTVSCPKPASDR 527
           F EI   +S   SV +E T+S P+P+S R
Sbjct: 291 FDEILHANSSVHSVATEATISNPRPSSGR 319


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = -2

Query: 559 MLMLSDDICIALSEAGLGQETVFSLITLLHPE-SRGKISLKSSNPEDPPIIYSGYFTNEN 383
           +L   D++ + + +  L Q+T  S  +    E S+  IS  SS         +G  + + 
Sbjct: 212 VLSFGDEVDMPIVKKPLRQKTPVSRSSDTTTELSKDLISSSSSIHSTYSSAQTGLTSAKV 271

Query: 382 DLDNFARYLENFNTVINSTHFKELKSQVVDLK 287
             D +AR ++  +T +NS+   +++ ++  LK
Sbjct: 272 SSDEYARQVDTLDTKLNSSSKSKVQEEISRLK 303


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
 Frame = -2

Query: 538 ICIALSEAGLGQETVFSLITLLHPESRGKISLKSSNPE--DPPIIYSGYFTNE--NDLDN 371
           I IAL+   +    + S+I LL     G+I LK++NP   D   + + +   E  + LD+
Sbjct: 26  IFIALAAVIVLLICLLSVILLLRYTRHGRILLKNTNPGELDDEALENEHIDEEGFSLLDD 85

Query: 370 FA--RYLE----NFNTVINSTHFKELKSQVVDLKVKQCRQWPFGSHEYWACYALNLASTQ 209
               RYL+      N++ ++ +        + ++ K    W F  ++ + CY  N     
Sbjct: 86  MGKERYLQAREFELNSMKSNVNTDAKLLDFLQVQEKGVLAWHFIPNQEYNCYVKNKTELS 145

Query: 208 YHTVGTCAM 182
           +     C M
Sbjct: 146 FLGNEECCM 154


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = -2

Query: 595 TASFLPVXMCSQMLMLSDDICIALSEAGLGQETVFSLITLLHPESRGKISLKSSNPED-P 419
           T  FLP    +  L++ DD  + LS   + +   FS     H +   +I+ + S  E  P
Sbjct: 46  TTRFLPFCDLNPALLVKDDKLVTLSYPQISKYFTFS--PFEHTDK--QIAERFSKGESLP 101

Query: 418 PIIYSGYFTNENDLDNFARY 359
            ++Y G        DN++++
Sbjct: 102 VLVYMGNEERNGPTDNWSQH 121


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 418 PIIYSGYFTNENDLDNFARYLENFNTVIN 332
           P++ S    N    D+F   +E FN++IN
Sbjct: 820 PVLLSNMTINSETFDDFEFSVEQFNSLIN 848


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 478  LLHPESRGKIS--LKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVIN 332
            LL   S G +S   K+ N  DP   Y    T +ND D F R+L++    +N
Sbjct: 1467 LLFLHSPGYLSDIAKTCN-NDPRFAYEICKTLDNDSDKFVRWLDDNAAEVN 1516


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 541 DICIALSEAGLG---QETVFSLITLLHPESRGKISLKSSN 431
           D CI +S A      +ET    I +LHPES    + KS++
Sbjct: 73  DRCIRVSPANFALSAEETAVPDIAMLHPESADFQTFKSTS 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,647
Number of Sequences: 5004
Number of extensions: 43505
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)