Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_P22
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 49 3e-06
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 48 4e-06
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 46 2e-05
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 42 5e-04
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 38 0.005
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 36 0.019
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 29 2.8
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584... 28 4.9
11_01_0550 + 4355857-4356051,4357287-4357355,4357429-4357561,435... 27 8.6
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 27 8.6
07_01_0364 + 2710650-2711228 27 8.6
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 48.8 bits (111), Expect = 3e-06
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Frame = -2
Query: 493 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKE 314
F L +L P S G ++L+S++P+ P + YF + D++ R +E V+ S F
Sbjct: 416 FILEKILGPMSTGHVALRSADPDANPAVTFNYFRDPRDVERCVRGIETIERVVRSRAFAR 475
Query: 313 LK-SQVVDLKV----KQCRQWPFGSHEYWACYALNLASTQYHTVGTC--AMGDKHIG-VV 158
+ V ++ ++ P A L TV T G H+G VV
Sbjct: 476 FTYANVTAMEAAVLGRRAGHLPVNLLPRRATDTRPLQQYCRETVMTIWHYHGGCHVGAVV 535
Query: 157 DSRLRVHGVTGLRVVDAS 104
D RV GV GLRVVD+S
Sbjct: 536 DQDYRVLGVRGLRVVDSS 553
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 48.4 bits (110), Expect = 4e-06
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Frame = -2
Query: 493 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKE 314
F L +L P S G + L++++P P + YF DL+ +E VI S F
Sbjct: 420 FILEKILGPVSSGHVELRTTDPRANPSVTFNYFREAEDLERCVHGIETIERVIQSRAFSN 479
Query: 313 L--KSQVVDLKVKQCRQWP-------FGSHEYWACYALNLASTQYHTVGTCAMGDKHIGV 161
+ V+ +P Y ++ T +H G C +G V
Sbjct: 480 FTYANASVESIFTDSANFPVNLLPRHVNDSRSPEQYCMDTVMTIWHYHGGCHVG----AV 535
Query: 160 VDSRLRVHGVTGLRVVDAS 104
VD RV GV GLRV+D+S
Sbjct: 536 VDDDYRVFGVQGLRVIDSS 554
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 46.0 bits (104), Expect = 2e-05
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Frame = -2
Query: 493 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKE 314
F L +L P+S G+++L++ +P+D P + YF++ +DL A + VI S F
Sbjct: 409 FILEKVLGPQSTGRLALRNLDPDDNPTVSFNYFSHPDDLRRCAAGIATIERVIRSRAFSR 468
Query: 313 L--KSQVVDLKVKQCRQWPF------GSHEYWAC--YALNLASTQYHTVGTCAMGDKHIG 164
+ + ++P G + A + + T +H G C +G
Sbjct: 469 FAYPNFAFPATINVTAEFPANLMRMRGGSDPRALEQFCRDTVMTIWHYHGGCQVG----R 524
Query: 163 VVDSRLRVHGVTGLRVVDAS 104
VVD RV G+ LRV+D S
Sbjct: 525 VVDRDYRVLGIEALRVIDGS 544
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 41.5 bits (93), Expect = 5e-04
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Frame = -2
Query: 493 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKE 314
F L +L P S G + L++ NP+D P + YF + DL + VI S F
Sbjct: 417 FILEKILGPLSTGHLELRNRNPDDNPSVTFNYFAHPEDLRRCVAGVSVIERVIRSEAFAN 476
Query: 313 LKSQV--VDLKVKQCRQWPFG---SHEYWAC----YALNLASTQYHTVGTCAMGDKHIGV 161
V+ + +P H+ + + + T +H G C + V
Sbjct: 477 FTYPYFSVETLLNMTAGFPVNLRPRHDNDSTSLEQFCKDTVMTIWHYHGGCQVN----RV 532
Query: 160 VDSRLRVHGVTGLRVVDAS 104
VD+ RV GV LRV+D S
Sbjct: 533 VDAEYRVIGVDALRVIDGS 551
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 38.3 bits (85), Expect = 0.005
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
Frame = -2
Query: 469 PESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKELKS----- 305
P S G ++L ++ + P + YF++ DL ++ ++ + F EL +
Sbjct: 421 PLSTGHLALIDTDVKKNPAVTFNYFSHPQDLTRCVYGIKTIERILKTNRFSELSANTDGH 480
Query: 304 ---QVVDLKVK-QCRQWPFGSHEYWAC--YALNLASTQYHTVGTCAMGDKHIGVVDSRLR 143
+V+++ V+ P +++ + + + T +H G C +G VVD + R
Sbjct: 481 SMERVLNMSVQANVNLIPKHTNDTESLEQFCRDTVITIWHYHGGCHVGK----VVDQQHR 536
Query: 142 VHGVTGLRVVDASVMPTRTSG 80
V GV+G+RVVD S +R+ G
Sbjct: 537 VLGVSGVRVVDGSTF-SRSPG 556
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 36.3 bits (80), Expect = 0.019
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 11/143 (7%)
Frame = -2
Query: 493 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKE 314
F L + P S G + L ++ P + YF + DL ++ ++ + HF
Sbjct: 427 FILSKIDGPLSTGNLVLVDTDINSNPTVTFNYFQHPKDLSRCVYGIKTIERILKTNHFTN 486
Query: 313 LKSQ--------VVDLKVK-QCRQWPFGSHEYWAC--YALNLASTQYHTVGTCAMGDKHI 167
V+++ V P +++ + + + T +H G C +G
Sbjct: 487 FTLNGGGYPMEVVLNMSVTANINLIPKHTNDSTSMEQFCRDTVVTIWHYHGGCHVGK--- 543
Query: 166 GVVDSRLRVHGVTGLRVVDASVM 98
VVD + RV GV+GLRV+D S +
Sbjct: 544 -VVDQQYRVIGVSGLRVIDGSTL 565
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 347 QHGHQQYTLQRIEVSSGRSKGEAMSAMALWKSRVLGLLCP*FSQHTVP 204
Q G +++ +R ++SSGR G A + W S V P QH VP
Sbjct: 664 QSGDRRFHQKRNDMSSGRGHGHAWNNPPSWPSPVANGFVP--MQHGVP 709
>05_02_0033 +
5847754-5847982,5848308-5848437,5849038-5849116,
5849194-5849251,5849732-5850795,5850899-5851003,
5851369-5851473
Length = 589
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 157 LPPLYVYRPWRKSLRYGTV 213
LPP Y+ + W + RYGT+
Sbjct: 375 LPPHYILKRWTQEARYGTI 393
>11_01_0550 +
4355857-4356051,4357287-4357355,4357429-4357561,
4358248-4358454,4358601-4358716,4358814-4358918,
4359008-4359180,4359273-4359363,4359682-4359831,
4359928-4360173
Length = 494
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 355 ENFNTVINSTHFKELKSQVVDLKVKQ 278
E+ + ++NS HF+ L + + D KV Q
Sbjct: 295 EDLSRIVNSNHFRRLTNLIEDKKVAQ 320
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -2
Query: 196 GTCAMGD--KHIGVVDSRLRVH 137
G CA GD K+IGVVDS VH
Sbjct: 443 GYCAQGDRTKNIGVVDSEYIVH 464
>07_01_0364 + 2710650-2711228
Length = 192
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 33 ISAAFSALIPPGASVXPLVLVG 98
I AA S L+PPG P+V VG
Sbjct: 140 IQAALSQLLPPGQPPVPVVFVG 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,539
Number of Sequences: 37544
Number of extensions: 315491
Number of successful extensions: 811
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -