Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_P22
(596 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase p... 73 8e-13
AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase p... 73 8e-13
U50939-1|AAC50477.1| 534|Homo sapiens amyloid precursor protein... 30 5.4
BC013301-1|AAH13301.1| 534|Homo sapiens amyloid beta precursor ... 30 5.4
BC000480-1|AAH00480.1| 534|Homo sapiens amyloid beta precursor ... 30 5.4
AY358647-1|AAQ89010.1| 515|Homo sapiens APRG372 protein. 30 5.4
AY197612-1|AAP35030.1| 534|Homo sapiens protooncogene protein 1... 30 5.4
AC004638-1|AAC23784.1| 534|Homo sapiens amyloid precursor prote... 30 5.4
AF051164-1|AAC83554.1| 1147|Homo sapiens heart muscle inducible ... 30 7.2
AF049656-1|AAC83553.1| 1147|Homo sapiens inducible nitric oxide ... 30 7.2
>BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase
protein.
Length = 594
Score = 72.9 bits (171), Expect = 8e-13
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Frame = -2
Query: 463 SRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKELKSQVVDLKV 284
S G + L+S+NP+D P+I Y + E D+ E+F + T + + +
Sbjct: 431 SVGWLKLRSANPQDHPVIQPNYLSTETDI-------EDFRLCVKLTREIFAQEALAPFRG 483
Query: 283 KQCRQWP-FGSHEYWACYALNLASTQYHTVGTCAMGDKH--IGVVDSRLRVHGVTGLRVV 113
K+ + S + + A + YH TC MG VVD + RV GV LRVV
Sbjct: 484 KELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVV 543
Query: 112 DASVMPTRTSGXTDAPGGMRAEKAAEM 32
DAS+MP+ SG +AP M AEKAA++
Sbjct: 544 DASIMPSMVSGNLNAPTIMIAEKAADI 570
>AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase
protein.
Length = 482
Score = 72.9 bits (171), Expect = 8e-13
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Frame = -2
Query: 463 SRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKELKSQVVDLKV 284
S G + L+S+NP+D P+I Y + E D+ E+F + T + + +
Sbjct: 319 SVGWLKLRSANPQDHPVIQPNYLSTETDI-------EDFRLCVKLTREIFAQEALAPFRG 371
Query: 283 KQCRQWP-FGSHEYWACYALNLASTQYHTVGTCAMGDKH--IGVVDSRLRVHGVTGLRVV 113
K+ + S + + A + YH TC MG VVD + RV GV LRVV
Sbjct: 372 KELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVV 431
Query: 112 DASVMPTRTSGXTDAPGGMRAEKAAEM 32
DAS+MP+ SG +AP M AEKAA++
Sbjct: 432 DASIMPSMVSGNLNAPTIMIAEKAADI 458
>U50939-1|AAC50477.1| 534|Homo sapiens amyloid precursor
protein-binding protein 1 protein.
Length = 534
Score = 30.3 bits (65), Expect = 5.4
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -2
Query: 472 HPESRGKISLKSSNPED-PPIIYSGYFTNEN----DLDNFARYLENFNTVINSTHFKELK 308
+ E+ G+I ED +I G NEN D +NF ++N NT +N+T ++
Sbjct: 226 YSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTT---QIP 282
Query: 307 SQVVDL 290
S + D+
Sbjct: 283 SSIEDI 288
>BC013301-1|AAH13301.1| 534|Homo sapiens amyloid beta precursor
protein binding protein 1 protein.
Length = 534
Score = 30.3 bits (65), Expect = 5.4
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -2
Query: 472 HPESRGKISLKSSNPED-PPIIYSGYFTNEN----DLDNFARYLENFNTVINSTHFKELK 308
+ E+ G+I ED +I G NEN D +NF ++N NT +N+T ++
Sbjct: 226 YSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTT---QIP 282
Query: 307 SQVVDL 290
S + D+
Sbjct: 283 SSIEDI 288
>BC000480-1|AAH00480.1| 534|Homo sapiens amyloid beta precursor
protein binding protein 1 protein.
Length = 534
Score = 30.3 bits (65), Expect = 5.4
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -2
Query: 472 HPESRGKISLKSSNPED-PPIIYSGYFTNEN----DLDNFARYLENFNTVINSTHFKELK 308
+ E+ G+I ED +I G NEN D +NF ++N NT +N+T ++
Sbjct: 226 YSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTT---QIP 282
Query: 307 SQVVDL 290
S + D+
Sbjct: 283 SSIEDI 288
>AY358647-1|AAQ89010.1| 515|Homo sapiens APRG372 protein.
Length = 515
Score = 30.3 bits (65), Expect = 5.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 445 LKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVIN 332
L S NP P +Y+ Y + L RY E++ ++IN
Sbjct: 250 LASHNPTKPIFLYTAYQAVHSPLQAPGRYFEHYRSIIN 287
>AY197612-1|AAP35030.1| 534|Homo sapiens protooncogene protein 1
protein.
Length = 534
Score = 30.3 bits (65), Expect = 5.4
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -2
Query: 472 HPESRGKISLKSSNPED-PPIIYSGYFTNEN----DLDNFARYLENFNTVINSTHFKELK 308
+ E+ G+I ED +I G NEN D +NF ++N NT +N+T ++
Sbjct: 226 YSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTT---QIP 282
Query: 307 SQVVDL 290
S + D+
Sbjct: 283 SSIEDI 288
>AC004638-1|AAC23784.1| 534|Homo sapiens amyloid precursor
protein-binding protein 1 (APP-B1) protein.
Length = 534
Score = 30.3 bits (65), Expect = 5.4
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -2
Query: 472 HPESRGKISLKSSNPED-PPIIYSGYFTNEN----DLDNFARYLENFNTVINSTHFKELK 308
+ E+ G+I ED +I G NEN D +NF ++N NT +N+T ++
Sbjct: 226 YSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTT---QIP 282
Query: 307 SQVVDL 290
S + D+
Sbjct: 283 SSIEDI 288
>AF051164-1|AAC83554.1| 1147|Homo sapiens heart muscle inducible
nitric oxide synthase protein.
Length = 1147
Score = 29.9 bits (64), Expect = 7.2
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +1
Query: 85 WFWLASRXHPPLXALSHRELLTSNLPPLYVYR--PWR 189
W WL + + H+E+L L P Y Y+ PW+
Sbjct: 458 WIWLVPPVSGSITPVFHQEMLNYVLSPFYYYQIEPWK 494
>AF049656-1|AAC83553.1| 1147|Homo sapiens inducible nitric oxide
synthase protein.
Length = 1147
Score = 29.9 bits (64), Expect = 7.2
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +1
Query: 85 WFWLASRXHPPLXALSHRELLTSNLPPLYVYR--PWR 189
W WL + + H+E+L L P Y Y+ PW+
Sbjct: 458 WIWLVPPVSGSITPVFHQEMLNYVLSPFYYYQIEPWK 494
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,444,247
Number of Sequences: 237096
Number of extensions: 1648142
Number of successful extensions: 3456
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3453
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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