Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_P22
(596 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical pr... 63 1e-10
AL032654-11|CAB63389.2| 529|Caenorhabditis elegans Hypothetical... 31 0.82
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 30 1.4
Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical pr... 29 1.9
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 29 3.3
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 29 3.3
Z34533-9|CAA84303.2| 368|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z30973-5|CAA83224.2| 368|Caenorhabditis elegans Hypothetical pr... 28 4.4
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 28 4.4
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical
protein C34C6.4 protein.
Length = 599
Score = 63.3 bits (147), Expect = 1e-10
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Frame = -2
Query: 475 LHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKELKSQVV 296
+ +S+G I L++ +P PII Y ++D F + + + S F E + + +
Sbjct: 436 MRSQSKGYIMLQAKDPRRAPIINPNYMEEDSDWREFRKCIRVSRELFASKAFDEFRGKEL 495
Query: 295 DLKVKQCRQWPFGSHEYWACYALNLASTQYHTVGTCAMG---DKHIGVVDSRLRVHGVTG 125
C+ S + A++ YH TC MG DK V + V+G
Sbjct: 496 -APGPDCQ-----SDADIDRFVKEKAASAYHPSCTCKMGSENDKMAVVNPETMGVYGTEN 549
Query: 124 LRVVDASVMPTRTSGXTDAPGGMRAEKAAEM 32
L+VVDASVMP+ SG +AP M AE+AA++
Sbjct: 550 LKVVDASVMPSIVSGNLNAPVIMMAERAADL 580
>AL032654-11|CAB63389.2| 529|Caenorhabditis elegans Hypothetical
protein Y52B11A.7 protein.
Length = 529
Score = 30.7 bits (66), Expect = 0.82
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 39 AAFSALIPPGASVXPLVLVGITLASTTRSP--VTP*TLNLESTTPICLSPMAQVPTV 203
A FS ++ ++ PLVLV SP +TP L+ + TPI LSP A P +
Sbjct: 416 AIFSPIVLSPLALDPLVLVPGVANPIVLSPFVLTPFILSPQVMTPIILSPFALSPFI 472
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 580 PVXMCSQM--LMLSDDICIALSEAGLGQETVFSLITLLHPESR 458
P + SQM L+LS CI +S+ G G+ F L LLH +++
Sbjct: 107 PSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQ 149
>Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical
protein F49C5.9 protein.
Length = 376
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +3
Query: 381 SFSLVK*PE*IIGGSSGLELFREIFPLDSGCSSVISENTVSCPKPASDRAMHISSLNMSI 560
+F ++ P +G S + I P C +V+ T + P P A SS +MS+
Sbjct: 301 TFLIIMSPAHFLGISLSVTYCVIISPYRRVCIAVLMLITCTSPSPHPRSANSTSSSSMSV 360
Query: 561 CEHIXTGRNEAV 596
EHI N V
Sbjct: 361 IEHIMRRHNYRV 372
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -2
Query: 544 DDICIALSEAGLGQET-VFSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNF 368
D I +L+ E + S + H E+ GK+++K +P + ++ S + +DL F
Sbjct: 2000 DSIYSSLNTLAASMENEIISQELVRHTENAGKVNIKPISPRE--LVSSSFKITSSDLQQF 2057
Query: 367 ARYLENFN 344
LE +
Sbjct: 2058 FNVLEKMD 2065
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -2
Query: 544 DDICIALSEAGLGQET-VFSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNF 368
D I +L+ E + S + H E+ GK+++K +P + ++ S + +DL F
Sbjct: 2000 DSIYSSLNTLAASMENEIISQELVRHTENAGKVNIKPISPRE--LVSSSFKITSSDLQQF 2057
Query: 367 ARYLENFN 344
LE +
Sbjct: 2058 FNVLEKMD 2065
>Z34533-9|CAA84303.2| 368|Caenorhabditis elegans Hypothetical
protein B0285.10 protein.
Length = 368
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 421 PPIIYSGYFT-NENDLDNFARYLENFNTVINSTHFKELKSQVVDLKVKQCRQ-WPFGSHE 248
P I+ + T N +L F + I + SQV L +++C+ WP +H
Sbjct: 263 PGIVINEELTDNPPNLQAFCEAYVDSENKIKGLLSSNISSQVNSL-IQECKFFWPI-THL 320
Query: 247 YWACYALNL 221
+WAC+ + L
Sbjct: 321 FWACFIMKL 329
>Z30973-5|CAA83224.2| 368|Caenorhabditis elegans Hypothetical
protein B0285.10 protein.
Length = 368
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 421 PPIIYSGYFT-NENDLDNFARYLENFNTVINSTHFKELKSQVVDLKVKQCRQ-WPFGSHE 248
P I+ + T N +L F + I + SQV L +++C+ WP +H
Sbjct: 263 PGIVINEELTDNPPNLQAFCEAYVDSENKIKGLLSSNISSQVNSL-IQECKFFWPI-THL 320
Query: 247 YWACYALNL 221
+WAC+ + L
Sbjct: 321 FWACFIMKL 329
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 177 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 209
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 190 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 222
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 203 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 235
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 216 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 248
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 229 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 261
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 242 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 274
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 255 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 287
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 291 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 323
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 304 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 336
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 317 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 349
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 330 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 362
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 343 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 375
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 356 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 388
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 102 TLASTTRSPVTP*TLNLESTTPICLSPMAQVPT 200
T+ ST +P TP T+ TTP + M PT
Sbjct: 369 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 401
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +3
Query: 54 LIPPGASVXPLVLVGITLASTTRSPVTP*TLNLESTTPI 170
L+P P T +TT+ P T T STTP+
Sbjct: 98 LLPRVKGQNPFTTTSTTTTTTTQKPTTSTTTTTTSTTPV 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,548,711
Number of Sequences: 27780
Number of extensions: 249006
Number of successful extensions: 744
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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