Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P20
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    27   1.8  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   5.5  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    26   5.5  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   9.6  

>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 637 SPLRHRICSVSSE*FIFLLV*NNLQALFIVLRCILCLSIGINRIPYYI 494
           +PL H I S+        LV  + Q + ++L C+ CLSI   ++P+ I
Sbjct: 432 APLSHAIESLYGSTDAEALVATDEQDILMILICVYCLSIS-EKLPFSI 478


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/88 (25%), Positives = 36/88 (40%)
 Frame = -3

Query: 378 LTCYLKQKKAVGNLNKQLKNRL*GCNSQTGVFCYVI*LIICLNIIRVYI*LHKNIISPAI 199
           LT   K  K+     +  KN+    NS+ G+      +    N + VY     N   P +
Sbjct: 45  LTLISKITKSQNLFERHGKNKKIAVNSEYGIIA----VATEKNYVAVYH-FTLNASKPVL 99

Query: 198 RNRVIITNYQN*FGNINNQLKCKITFKM 115
                +T Y +  G I   +KC+I +K+
Sbjct: 100 TPSPYLTRYDDGPGEIFGPIKCEIQYKL 127


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 268 TNYLFKYHKSLYLAAQKHYLTCNKKSGHNN*LSKLVWQHK*SIEM*N 128
           T YL K HK L +    +    N+   +N+ +SKL+ +HK  +++ N
Sbjct: 198 TEYLEK-HKKLQIHVSAYSPLANQNDAYNSDISKLI-EHKTLVDIAN 242


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 156 NINNQLKCKITFKMYSKNLHLS 91
           N++N  KC  TF     ++HLS
Sbjct: 165 NLHNATKCNFTFPTIQGSIHLS 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,881
Number of Sequences: 5004
Number of extensions: 45582
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)