Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P17
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   5.9  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   5.9  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    25   5.9  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   5.9  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.9  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.9  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +1

Query: 43   FSLLLSNKSHLASAHGNHLXTFLMQLNKLVYPMLK*PIYLQVVTM 177
            FS+L   K+H    +     + +M++ K   P+L  P+Y + +++
Sbjct: 1056 FSVLCQMKNHRNFVYVKEKISLIMKILKSEVPLLYEPVYAETLSI 1100


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 347 KSTFFPFETPQAPLADRRR 403
           +S F  FET + PLAD+RR
Sbjct: 211 RSRFQTFETFRKPLADKRR 229


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 4   KXSPGVAQSSVFPFSLLLSNKSHLASAHG 90
           +  P V  SSV      LS KSH  S HG
Sbjct: 114 RRQPSVFNSSVPSLPQHLSTKSHSVSTHG 142


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 285 FLNRIYKYVLYACL*SIIFVIV 220
           FLNR +K  L+AC+   IF ++
Sbjct: 14  FLNRNFKKCLFACISIFIFALL 35


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 239 LYKHA*STYLYIRLRKKSDMFNIVFLQDAFLLCTNYKSTFFPFETPQAPLADRRRN 406
           LYK + +  +  RLR++  +  I+ + D F L T     ++ F+     L D   N
Sbjct: 163 LYKESSTNTVIYRLRRREHLKKIIDIFDQFPLLTKKYWDYYLFKKAFLILEDANLN 218


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = +2

Query: 260 TYLYIRLRKKSDMFNIVFLQDAFLLCTNYKSTFFPFETPQAPLADRRRNVNYKTN 424
           TY  +  RK + +FN      A      + +   P +TP + LA  +  ++   N
Sbjct: 396 TYAQLASRKLAQLFNYSSRDTAITSIYQFANLLSPADTPDSYLAAPKERLSISDN 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,273
Number of Sequences: 5004
Number of extensions: 32358
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)