Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P17
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0841 - 6379999-6380040,6380641-6380760,6380863-6380964,638...    28   3.4  
07_03_0753 + 21251216-21251221,21251486-21251557,21251920-212522...    28   4.5  
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434...    27   7.8  
01_01_0452 - 3357687-3358332,3358779-3359641                           27   7.8  

>06_01_0841 -
           6379999-6380040,6380641-6380760,6380863-6380964,
           6381146-6381302,6381480-6381511
          Length = 150

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 52  LLSNKSHLASAHGNHLXTFLMQLNKL 129
           L + K  + +AHGN L + +MQL+KL
Sbjct: 68  LTAGKHVMIAAHGNSLRSIIMQLDKL 93


>07_03_0753 +
           21251216-21251221,21251486-21251557,21251920-21252253,
           21252596-21252733,21252811-21253202
          Length = 313

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 125 NWSTLCLSNQFIYK*LQCHEINKIKSINYN 214
           NWSTL   +  I   L  +++NK+  +NYN
Sbjct: 242 NWSTLASIHTMIRNKLTHNKLNKLVYVNYN 271


>07_01_0584 +
           4345134-4345237,4346165-4346267,4346397-4346466,
           4346552-4346590,4346684-4346801,4346894-4346951,
           4347031-4347095,4347281-4347341,4347678-4347779,
           4348005-4348070,4348399-4348443,4348540-4348797,
           4349289-4349501,4350103-4350411,4350461-4350613
          Length = 587

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 214 SLYDDKNYTLQTRVEHILIYTIKKKIR 294
           ++YDD+ + L T +  ILIY + + IR
Sbjct: 140 NVYDDRIFALATVLSSILIYNLPETIR 166


>01_01_0452 - 3357687-3358332,3358779-3359641
          Length = 502

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 293 DMFNIVFLQDAFLLC 337
           D+FNIVFL  AFL+C
Sbjct: 130 DVFNIVFLSLAFLVC 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,598,707
Number of Sequences: 37544
Number of extensions: 171462
Number of successful extensions: 295
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)