Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P17
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine re...    27   9.2  

>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
            W05B2.4 protein.
          Length = 2265

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 115  ALGMXRDDXHVQMPDEIC 62
            ALG  R+   +QMPD+IC
Sbjct: 1584 ALGAIREKLSIQMPDDIC 1601


>AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein9 protein.
          Length = 293

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 266 LYIRLRKKSDMFNIVFLQDAFLLCTNYKSTFF 361
           L ++    S   NI+++ ++FL+  +Y +TF+
Sbjct: 226 LILKQYSSSSWENIIYMHNSFLMSLSYSNTFY 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,765,301
Number of Sequences: 27780
Number of extensions: 177637
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)