Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P16
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    27   2.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.8  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    27   3.8  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    26   5.0  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      26   6.6  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   8.7  

>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/80 (22%), Positives = 32/80 (40%)
 Frame = +2

Query: 260 KKKKNFFSLQYKNLLAKASISHYISYLFFTSRRIFSNRAPLQTDNATIHVTHKHALILMV 439
           KKK++  SL Y         +HY+S L +    +     P   +    +++     +L+ 
Sbjct: 57  KKKRSKTSLVYSQPADSGVGTHYLSQLHYAVEYLKERNEPKTAEEIASYLSTPLTPMLLN 116

Query: 440 LVAKFKLRIYDDHFNLFQIK 499
           L+ K     YD+    F  K
Sbjct: 117 LLKKNNRIYYDERNETFTFK 136


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 380 LQTDNATIHVTHKHALILMVLVAKFKLRIYDDHFNLFQIKS-KGLSFSL 523
           L+TD ++IH  H +    +  V  +  R+  D+F L+ +K  K L + L
Sbjct: 411 LETDESSIHSRHWYPSNSLPDVLSYASRVRFDYFFLYDLKLWKSLRYKL 459


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +1

Query: 538 P*HSESQFLEGLQIHVTIVILTSGNVFGVFAVTSAVGVSDLENG----SDGATVLAGNAL 705
           P  S+SQFL+ +   +   I TSG       +T+AV V D E G      GA +LA N +
Sbjct: 478 PSTSKSQFLKYVCNFLPRAIYTSGKASSAAGLTAAV-VKDEETGDFTIEAGALMLADNGI 536


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 629 QLPVPSASPILKTVPMGQP 685
           +LPVPS +PIL T P+  P
Sbjct: 56  KLPVPSTNPILTTEPIVGP 74


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 404 HVTHKHALILMVLVAKFKLRIYDDHFNLFQIKSKGLSFSLSLE-PLLDIQNPN 559
           ++T  H      +V K K+  Y++  +  ++ S+GLS SLS   P +D ++ N
Sbjct: 334 YITFIHPSSSSPIVRKKKVLRYEEDLDDMKLTSEGLSKSLSKPFPDIDFEDAN 386


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 692 ASTVAPSEPFSRSETPTA 639
           AS+  PSE  SR+ETPTA
Sbjct: 495 ASSPNPSETNSRAETPTA 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,697
Number of Sequences: 5004
Number of extensions: 51973
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)