Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P16
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical ...    29   4.6  

>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 716 TSVSRALPASTVAPSEPFSRSETPTALVTAKTP 618
           TSVS + P S V  +   S   TPT L   KTP
Sbjct: 516 TSVSSSTPRSVVRTTSTSSVPTTPTGLAAPKTP 548


>Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 695 PASTVAPSEPFSRSETPTALVTAKT-PKTFPDVRITMVTWI*RPSRNW 555
           P+S++  S P SR   P+A  +AK+ P   P  +  +V +   PSR W
Sbjct: 752 PSSSILSSSPGSRISAPSAASSAKSAPAASPSRQPPLVDF--DPSRRW 797


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 720 YYICLEGVAREYGCPIGTVFKIGDADGTGNCEDPEDVPGCED 595
           ++ C EG+A    CP   VF         +C+ P++V  C +
Sbjct: 194 FFSCSEGIAHRRNCPANLVFN----PAISSCDWPKNVMDCSE 231


>AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 695 PASTVAPSEPFSRSETPTALVTAKT-PKTFPDVRITMVTWI*RPSRNW 555
           P+S++  S P SR   P+A  +AK+ P   P  +  +V +   PSR W
Sbjct: 752 PSSSILSSSPGSRISAPSAASSAKSAPAASPSRQPPLVDF--DPSRRW 797


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,114,611
Number of Sequences: 27780
Number of extensions: 296151
Number of successful extensions: 862
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)