Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P14
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    29   0.57 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   1.00 
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    28   1.00 
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    27   3.0  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   5.3  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   7.0  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   7.0  

>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 35  PRHNNLTSIFTSQIGPGQH*LEYSFGVQRVLPGQN 139
           P   N ++I  S+  P ++ LE SF +QR++ G+N
Sbjct: 10  PTQQNDSTIIESRYSPEEY-LEQSFEIQRIISGEN 43


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 490 SDTLIVVHGLLHTIIFQNELNLLGAV 567
           +D++  ++ +LH+++FQNEL L   V
Sbjct: 462 NDSVFSMYKVLHSLVFQNELGLTNTV 487


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 504 YKSVRQSPSIPFDSSKTPARTNLKPSTPSPI 412
           +KS+ + P  P     TP RT + P T SPI
Sbjct: 37  FKSLLEDPVNPIRPVYTPTRTEITPVTLSPI 67


>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 521 RSPWTTIRVSDRAPAYRSTAPRHRPGLISNLPHR 420
           + PWTT+ + ++  AY      H P   S++  +
Sbjct: 63  KQPWTTLSIEEKKAAYWIAFGEHGPRAFSHISQK 96


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 612 LVNKVKKFNXTN--DSIHSPKKVKFVLKNNCMQKPVD 508
           L+ + KK   TN  D++H  K   FV KN+ +Q  ++
Sbjct: 29  LIYRPKKIIKTNQEDAVHDLKYENFVSKNHVLQSDIN 65


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 597 KKFNXTNDSIHSPKKVKFVLKNNCMQKPVDYYKSVRQSPSIPFDSSK 457
           +K+N     +   KK+    K NC    VD +K  R      +D+ K
Sbjct: 18  QKYNEATTLLSKLKKLLGNFKENCTSVVVDGHKKPRSESRKKYDAKK 64


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 498 SVRQSPSIPFDSSKTPARTNLKPSTPSPI 412
           SV+ SPS  F S  +P ++ +KP+  S +
Sbjct: 222 SVKSSPSKSFVSISSPVQSTVKPTKASGV 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,219
Number of Sequences: 5004
Number of extensions: 48232
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)