Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P14
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0149 - 8935172-8935254,8935792-8937319                           33   0.19 
08_01_1032 + 10447474-10448030,10448784-10449813                       31   0.78 
04_03_0055 + 10299539-10299703,10300042-10300746,10301025-103011...    28   7.2  
01_05_0790 + 25253363-25254136,25259037-25259897                       28   7.2  
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671     27   9.6  

>05_03_0149 - 8935172-8935254,8935792-8937319
          Length = 536

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -3

Query: 581 RMIRFTAPRRLSSF*KIIVCRSPWTTIRVSDRAPAYRSTAPRHRPGLISNLPH 423
           R +R T+PR  SSF     C+S  T++ ++ R PA  +T+      L+++L H
Sbjct: 34  RALRGTSPRPPSSFLLRYGCQSSTTSVNLAHREPATHTTSSASPLRLLASLSH 86


>08_01_1032 + 10447474-10448030,10448784-10449813
          Length = 528

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 11/43 (25%), Positives = 27/43 (62%)
 Frame = -2

Query: 612 LVNKVKKFNXTNDSIHSPKKVKFVLKNNCMQKPVDYYKSVRQS 484
           L N++K+++      H    V+ ++K+ CMQ+ ++YY  ++++
Sbjct: 440 LWNEMKRYDIRPSYSHYMSVVQGLIKHGCMQRALEYYDEMKEN 482


>04_03_0055 +
           10299539-10299703,10300042-10300746,10301025-10301116,
           10302896-10303313
          Length = 459

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 379 ITVSD*LSNDTKMNCYFLLSASWIVDITFMDL 284
           + VSD L  D   NC F++   +I D+  M+L
Sbjct: 278 VNVSDVLPEDVSKNCIFMIDFIFISDVDNMNL 309


>01_05_0790 + 25253363-25254136,25259037-25259897
          Length = 544

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 507 YYKSVRQSPSIPFDSSKTPARTNLKPSTPSPINP 406
           +Y++ R+     F   ++ + T  KP  PSP++P
Sbjct: 18  FYRAARKLRGHAFQYCRSSSATTTKPPPPSPVSP 51


>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
          Length = 502

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 484 ALSDTLIVVHGLLHTIIFQNELNLLGAVNRIIRXIKF 594
           A+S+ +I   G LH I  + + N++GAV R+I  + F
Sbjct: 437 AISEEMIGEGGPLHGIPSERDRNIVGAVVRVIIAVIF 473


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,810,787
Number of Sequences: 37544
Number of extensions: 276731
Number of successful extensions: 750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)