Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P14
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U23450-5|AAK31466.3|  706|Caenorhabditis elegans Hypothetical pr...    29   2.8  
D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic nucleoti...    29   2.8  
Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical pr...    29   3.7  
DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting prote...    29   3.7  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical
           protein ZC84.2 protein.
          Length = 733

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 103 QFWGSTGASRSELNCTASGVCVAKEQCLYALYDYSRAQKHWTTHFKLI*IIYD 261
           +F+  T  S +++ CT + +   KE   Y+ Y      K+W  HF+++ + +D
Sbjct: 158 RFYNGTLNSTTQVECTYNMLTNMKEMPTYSQYPDLGWSKYW--HFRMLWVFFD 208


>U23450-5|AAK31466.3|  706|Caenorhabditis elegans Hypothetical
           protein C30B5.1 protein.
          Length = 706

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 546 FVLKNNCMQKPVDYYKSVRQSPSIPFDSSKTPARTNLKPSTPS 418
           F++ NN    P  +Y      PS P DSS+       +  TPS
Sbjct: 563 FLINNNQFNSPTPFYALNSYFPSFPMDSSQVYQNATDEHFTPS 605


>D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 733

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 103 QFWGSTGASRSELNCTASGVCVAKEQCLYALYDYSRAQKHWTTHFKLI*IIYD 261
           +F+  T  S +++ CT + +   KE   Y+ Y      K+W  HF+++ + +D
Sbjct: 158 RFYNGTLNSTTQVECTYNMLTNMKEMPTYSQYPDLGWSKYW--HFRMLWVFFD 208


>Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical
           protein ZC15.7 protein.
          Length = 633

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 172 KEQCLYALYDYSRAQK-HWTTHFKLI*IIYDFFNTLLELNP 291
           K++ L  L DY++A   HW T +    ++ +   T  +LNP
Sbjct: 74  KKEALLRLTDYNKATVLHWATQYNCKQVVKEIVQTFDKLNP 114


>DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting protein
           MLT-4 protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 172 KEQCLYALYDYSRAQK-HWTTHFKLI*IIYDFFNTLLELNP 291
           K++ L  L DY++A   HW T +    ++ +   T  +LNP
Sbjct: 74  KKEALLRLTDYNKATVLHWATQYNCKQVVKEIVQTFDKLNP 114


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 179 CSFATQTPLAVQFSSDREAPVEPQNCILTNVVPGLF 72
           C      P+A  F  DRE P++P +   +N +PG F
Sbjct: 120 CGRECVAPIAKSFQIDREVPIQPVSS-SSNNIPGSF 154


>Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical
           protein K01D12.2 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -1

Query: 226 SNVSVHENSHTRHTNTAPLRHRHH*LYSSVLTGKHPLNPKTVF*LMLSRAYLASKDACKI 47
           +NV + E  H+  T   PLR +HH   +SV T       +       S  +LAS  A +I
Sbjct: 262 NNVQLEEIHHSSKTTHHPLRVQHHLQQNSVHTSIAERTDQQPLVEPTSEIHLASSTAVEI 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,414,808
Number of Sequences: 27780
Number of extensions: 266320
Number of successful extensions: 745
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)