Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P13
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...   130   8e-32
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...   124   4e-30
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   0.47 
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    27   0.82 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   0.82 
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    27   1.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   5.8  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   5.8  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   5.8  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    24   7.7  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    24   7.7  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score =  130 bits (314), Expect = 8e-32
 Identities = 65/107 (60%), Positives = 76/107 (71%)
 Frame = -3

Query: 323 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 144
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   + V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 143 FKTNFGGGKSTGFALXYDTLXLAKKFEPKHRXARHGLYEKKRPTRKQ 3
            +T+FGGG+STGFAL YD+    KKFEP +R  R G  E  +   +Q
Sbjct: 60  LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQ 106


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score =  124 bits (300), Expect = 4e-30
 Identities = 60/107 (56%), Positives = 74/107 (69%)
 Frame = -3

Query: 323 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 144
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK     V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 143 FKTNFGGGKSTGFALXYDTLXLAKKFEPKHRXARHGLYEKKRPTRKQ 3
            +T++GGG++TGFAL YD +   KKFEP +R  R G  E  +   +Q
Sbjct: 60  LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQ 106


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 28.3 bits (60), Expect = 0.47
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 288 FASANSRCSFTHFELFSII 344
           F+S  SRCSFT FE+ SI+
Sbjct: 776 FSSVISRCSFTDFEINSIL 794


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 328 SK*VKEQRLFALANS*PTDCWRASRWFAMFY--IQENQLSARPRSVR 194
           +K VK++R+ AL N      WR   W A ++  IQ+ + S  P S R
Sbjct: 149 TKIVKQERILALYNGFEATMWRHVVWNAGYFGVIQKIRNSLTPASSR 195


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 206 EIREKLAKMYKVTPDVVFVFGFKTNFGG 123
           +++E LAK YK+ P  +F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 322 ILNYFQ*FGVYTHVSLLKQDIGRPNSF 402
           + +YFQ +G   HV +LK  + RP SF
Sbjct: 99  VKDYFQQWGPLLHVKVLKDWLQRPYSF 125


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 124 PPKFVLKPNTNTTSGVTLYILASFS 198
           PPK  LKP+ +T+  ++ Y LA  S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 117  FATSEVCLETEYEHYIGSNL 176
            +A SE  LE EYE  +GS L
Sbjct: 1296 YAASENILEIEYEDEVGSGL 1315


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 196 SRISVLLTVGFPGCKTSQTICLRANNL 276
           SRI  + ++G    K  Q++CLR N +
Sbjct: 48  SRIQSMASLGLERFKNLQSLCLRQNQI 74


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 147  EYEHYIGSNLVHFGELLTDLGLADS 221
            +YE + G   VHF   LT+ G+ ++
Sbjct: 985  DYESHHGEGNVHFNVTLTEAGMKEA 1009


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 315 RNSDYSHSQIHDQQIVGAQADGLRCFTSRKTNCQQDRDP 199
           +NS++S +   +Q    + ADG R +   +   Q+ R+P
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNP 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,033
Number of Sequences: 5004
Number of extensions: 31994
Number of successful extensions: 82
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)