Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P13
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...   142   1e-34
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    42   1e-04
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    29   0.94 
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    28   2.9  
U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine rece...    27   5.0  
U88311-3|AAB42345.1|  526|Caenorhabditis elegans Udp-glucuronosy...    27   6.7  
AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical ...    27   6.7  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    27   6.7  
AF016686-13|AAB66233.1|  470|Caenorhabditis elegans Hypothetical...    27   6.7  
Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical pr...    26   8.8  
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    26   8.8  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    26   8.8  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    26   8.8  
AC006808-2|AAY86282.1|   80|Caenorhabditis elegans Hypothetical ...    26   8.8  

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score =  142 bits (343), Expect = 1e-34
 Identities = 66/102 (64%), Positives = 80/102 (78%), Gaps = 1/102 (0%)
 Frame = -3

Query: 305 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 126
           TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V  FGF++  G
Sbjct: 6   TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65

Query: 125 GGKSTGFALXYDTLXLAKKFEPKHRXARHGLYEK-KRPTRKQ 3
           GGKS GFAL YDT+  AKKFEPK+R  R GL  K ++P RKQ
Sbjct: 66  GGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQ 107


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = -3

Query: 254 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 156
           MV +V+ PG+PT  K +IREK+A  Y + PD +
Sbjct: 1   MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 110 GFALXYDTLXLAKKFEPKHRXARHG 36
           GF L YDT   A K++P+H     G
Sbjct: 54  GFTLVYDTFDFANKYQPEHSSNHDG 78


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +3

Query: 129 EVCLE--TEYEHYIGSNLVHFGELLTDLGLADSWFSWM*NIANHLLARQQSVGHEFASAN 302
           E+C +  T+  H    +LVH GE      + D  FS   N+  HL  R  +    +    
Sbjct: 539 EICTKEFTQLAHLQKHHLVHTGERPHRCDICDKRFSSTSNLKTHL--RLHNGQKPYTCDV 596

Query: 303 SRCSFTHFELFSIIRRLHA 359
               FT +    + +RLHA
Sbjct: 597 CDAKFTQYVHLRLHKRLHA 615


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +1

Query: 193 FSRISVLLTV-GFPGCKTSQTICL-RA-NNLLVMNLRVRIVAVPSLILNY 333
           FS + V L V GF    +   ICL RA NN++V+ +   I   P+L+L+Y
Sbjct: 22  FSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71


>U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein73 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +1

Query: 238 KTS-QTICL-RA-NNLLVMNLRVRIVAVPSLILNY 333
           KTS   ICL RA NN++V+     ++  PSL+L+Y
Sbjct: 4   KTSFNVICLTRAVNNIIVLVFNFLVITFPSLLLSY 38


>U88311-3|AAB42345.1|  526|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein27 protein.
          Length = 526

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 206 EIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALXYDTLXLAK 72
           + ++ L K+ K  P+V F++ ++TN      T FA   D +  +K
Sbjct: 317 DAKKNLIKVIKSEPNVTFIWKYETN-----DTSFAFGIDNIYFSK 356


>AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical
           protein Y51A2A.6 protein.
          Length = 140

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -3

Query: 143 FKTNFGGGKSTGFALXYDTLXLA----KKFEPKHRXARHGLYEKKRPTR 9
           F  N GGGK+ GF+    +   +    KK    H    HG   + RPTR
Sbjct: 21  FVKNNGGGKNHGFSSASSSSSSSSEEGKKHGHGHHHHNHGRPSRPRPTR 69


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 243  IANHLLARQQSVGHEFASANSRCSFTHFEL 332
            +A H+ A + S+G+ +     +C+  HF L
Sbjct: 991  VAMHISAEEGSIGNTYPLPQMKCTIDHFTL 1020


>AF016686-13|AAB66233.1|  470|Caenorhabditis elegans Hypothetical
           protein R07C3.3 protein.
          Length = 470

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 369 QRHVRVDAELLKIIQNE*RNSDY 301
           ++H++ D + LK+ +N+ +NSDY
Sbjct: 260 KKHLKWDLKSLKLFRNDSKNSDY 282


>Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical
           protein F26D2.3a protein.
          Length = 476

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 366 RHVRVDAELLKIIQNE*RNSDY 301
           +H + D + L++ +NE RNSDY
Sbjct: 266 KHSKWDLKSLRLFRNESRNSDY 287


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 371 SRDTCV*TPNY*K*FKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 225
           S D C+ +P +    K S  +A +RT  F   +  + K+M+ D+   PGK
Sbjct: 37  SDDNCIVSPRF---RKSSSRSALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 371 SRDTCV*TPNY*K*FKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 225
           S D C+ +P +    K S  +A +RT  F   +  + K+M+ D+   PGK
Sbjct: 37  SDDNCIVSPRF---RKSSSRSALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 371 SRDTCV*TPNY*K*FKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 225
           S D C+ +P +    K S  +A +RT  F   +  + K+M+ D+   PGK
Sbjct: 37  SDDNCIVSPRF---RKSSSRSALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83


>AC006808-2|AAY86282.1|   80|Caenorhabditis elegans Hypothetical
           protein Y58G8A.5 protein.
          Length = 80

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 135 CLETEYEHYIGSNLVHFGELLTDLGLADSWFSWM*NIANHLLARQQ 272
           C  +   H++G  L  + E   D+ +   W+ W  N+ + L  ++Q
Sbjct: 26  CAPSVSAHHLGLRLKKWYEWNNDMEITKKWYDWQ-NVPHALQQKRQ 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,506,569
Number of Sequences: 27780
Number of extensions: 186608
Number of successful extensions: 543
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)