Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P12
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    53   2e-08
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    33   0.017
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   1.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   1.9  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   5.9  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   7.8  

>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 20/46 (43%), Positives = 31/46 (67%)
 Frame = -2

Query: 364 LRAGFHAIPSMQRMHMHVISTDMISTSLKTXIHWXSFCTKFFIPYD 227
           ++ GFHA PSM  +H+H+++ D +S SLK   H+ SF + FF+  D
Sbjct: 133 IKVGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKID 178


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 33.5 bits (73), Expect = 0.017
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = -2

Query: 463 EINSIYXLNKSHISLLEEFGN-IFKELKXE---NESELRAGFHAIPSMQRMHMHVISTD 299
           +I SI  L   HI LLE   N +  E+  +   ++++L+   H +PS   +H+H++  D
Sbjct: 193 DIASIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQLKMFVHYLPSYYHLHVHILHVD 251


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 244  FFIPYDGEFAIHAYDISHIFLGRVSLLNIVSWSST 140
            F +PY   + ++ Y++  +F G      I  WS+T
Sbjct: 1102 FRVPYTDTYELNVYNVDDVFYGWFGDKAISGWSNT 1136


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 466  EEINSIYXLNKSHISLLEEFGNIFKEL 386
            EE+ S++ ++KS  S   +FGN+F  L
Sbjct: 1321 EEVCSVFNISKSVCSKYVQFGNVFNLL 1347


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 82  EVL*FSVKIXPITKQHNNILYCSKKLYLVEIHVPKKYVRYRXHELQTH 225
           EVL FSV   P+    N+IL      Y++        ++ +  EL+ H
Sbjct: 725 EVLPFSVSRQPLLSLTNDILQLYNNFYVLCEETMDTVIKLKDGELKAH 772


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 173 ISTKYSFLEQYRMLLCCLVIGIILTENYKTS 81
           +  K   + QY +  CCL+  I  TE  K +
Sbjct: 429 VKRKSRLVRQYSLAWCCLINAIRRTEGVKAA 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,598
Number of Sequences: 5004
Number of extensions: 32220
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)