Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P12
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852...    51   6e-07
11_01_0443 - 3399226-3399242,3399551-3399731,3399847-3399936,340...    27   6.0  
07_03_0272 - 16143201-16144937,16145346-16145351,16145406-161455...    27   7.9  

>03_02_0651 +
           10183050-10184167,10184350-10184974,10185023-10185208,
           10185325-10185660
          Length = 754

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
 Frame = -2

Query: 460 INSIYXLNKSHISLLEEF---GNIFKELKXENESELRAGFHAIPSMQRMHMHVISTDMIS 290
           ++S+  + K H+ LL      G  + +   E +S L      +PSM+++H+H+IS D  S
Sbjct: 608 LDSLADVKKEHLPLLRRMHSAGVKWAQKFLEEDSSL------VPSMRQLHLHIISQDFNS 661

Query: 289 TSLKTXIHWXSFCTKFFI 236
            SLK   HW SF T FF+
Sbjct: 662 ASLKNKKHWNSFTTTFFL 679


>11_01_0443 -
           3399226-3399242,3399551-3399731,3399847-3399936,
           3400377-3400459,3400540-3400667,3400747-3401002,
           3401094-3401199,3401300-3401366,3401467-3401580,
           3401811-3401889,3402189-3402359,3403135-3403267,
           3403874-3404033,3404119-3404261
          Length = 575

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 349 HAIPSMQRMHMHVISTDMISTSLKTXIHWXSFCTK 245
           HA  SM  +HM + S  +    L   +H  SFC K
Sbjct: 339 HAAISMVSLHMRIFSLLIPCFFLMVSVHLTSFCVK 373


>07_03_0272 -
           16143201-16144937,16145346-16145351,16145406-16145535,
           16145613-16145773,16146608-16146725,16147328-16147441,
           16149378-16149469,16149906-16149986,16150168-16150473
          Length = 914

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 211 HAYDISHIFLGRVSLLNIVSWSSTECY 131
           HA  +S  ++  +S L   +WSS+ CY
Sbjct: 140 HANSLSKCYVNVISFLKYSTWSSSLCY 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,749,132
Number of Sequences: 37544
Number of extensions: 171262
Number of successful extensions: 435
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)