Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P12
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine re...    30   0.76 
AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine re...    30   0.76 
U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC006666-2|AAK21416.2|  244|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ...    27   7.0  
Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform a protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 243 FLFPTMVSLQFMXTIS-HIFFWDVYLY*I*FLGAVQNVIVLFSNWXYLNREL*DFIYISY 67
           + FP  +  +F+   +   F W  YLY   F+  +  + + +++W  L+ E+ D I I Y
Sbjct: 112 YFFPFHIFTRFLSRRNLPDFIW--YLYAFFFVNELIGIFLYWAHWFILSFEVIDVIIIFY 169

Query: 66  ELIFYIFRI 40
           +  + I  I
Sbjct: 170 QTAYMILNI 178


>AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform b protein.
          Length = 329

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 243 FLFPTMVSLQFMXTIS-HIFFWDVYLY*I*FLGAVQNVIVLFSNWXYLNREL*DFIYISY 67
           + FP  +  +F+   +   F W  YLY   F+  +  + + +++W  L+ E+ D I I Y
Sbjct: 133 YFFPFHIFTRFLSRRNLPDFIW--YLYAFFFVNELIGIFLYWAHWFILSFEVIDVIIIFY 190

Query: 66  ELIFYIFRI 40
           +  + I  I
Sbjct: 191 QTAYMILNI 199


>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
 Frame = -2

Query: 478 VLPHEEINSIYXLNKSHISLLEEFGNIFKELKXEN----------ESELRAGFHAIP--S 335
           VL  + I     L  + + LLEE     +EL  E+          E  LR GFH  P  S
Sbjct: 47  VLSKQHIAKPTDLTVADVPLLEEMEKTGRELLREHLKKKGEADTVEDMLRIGFHLPPLLS 106

Query: 334 MQRMHMHVI 308
           +  +HMH+I
Sbjct: 107 VHHLHMHII 115


>AC006666-2|AAK21416.2|  244|Caenorhabditis elegans Hypothetical
           protein H31G24.3 protein.
          Length = 244

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = -2

Query: 343 IPSMQRMHMHVISTDMISTSLKTXIHWXSFCTKFFIPYDGEFAIHAYDISHIFLGRVSLL 164
           + S++  H      D+ S      IH+     K  +  D +F+    +I  +  G V +L
Sbjct: 53  VVSIKLRHRRRNVDDIWSMDATVKIHFEQDWLKGEVQVDSQFSNQGQEIEILNCGTVVIL 112

Query: 163 NIVSWSSTECYCV 125
           N  S SST C  V
Sbjct: 113 NAFSNSSTFCESV 125


>AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ion
           channel protein 12 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 254 LYKVFYSLRW*VCNSCXRYLTYFFGTCISTKYSFLEQY 141
           +++ F+S    +C SC     +FF  CI T Y F+E +
Sbjct: 393 IWQRFFSCADIICGSC-----FFFVNCIITFYMFIEYF 425


>Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical
           protein W03C9.6 protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 156 FLGAVQNVIVLFSNWXYLNR 97
           F+ A++N +V  S W Y+N+
Sbjct: 56  FIAAIENTVVGMSEWPYMNQ 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,220,359
Number of Sequences: 27780
Number of extensions: 178031
Number of successful extensions: 460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)