Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P12
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.97 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   0.97 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 291 PHPSKXKYIGIVSVQSFLFPTMV 223
           P+PS   YIG++++ +   PT +
Sbjct: 636 PYPSYYSYIGVLTLVATSMPTYI 658


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 175 HVPKKYVRYRXHELQTHHR 231
           H PK+ VR++ H+ + H +
Sbjct: 283 HAPKQTVRFKVHDPKAHSK 301


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 211 HAYDISHIFLGRVSLLNIVSW 149
           ++Y+IS+ F G  +L  +V+W
Sbjct: 269 YSYEISNAFRGNNNLKWLVNW 289


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 147 LQETIFSRDTRPKKICEI 200
           L    +SRD RPK  C +
Sbjct: 402 LTRAAYSRDVRPKYDCTL 419


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 147 LQETIFSRDTRPKKICEI 200
           L    +SRD RPK  C +
Sbjct: 402 LTRAAYSRDVRPKYDCTL 419


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 147 LQETIFSRDTRPKKICEI 200
           L    +SRD RPK  C +
Sbjct: 402 LTRAAYSRDVRPKYDCTL 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,090
Number of Sequences: 438
Number of extensions: 2416
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)