Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P10
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   4.5  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.5  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    25   6.0  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   6.0  
SPBC146.08c |||translation initiation factor eIF1A-like|Schizosa...    25   7.9  

>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 291 DIWLTDD*NI-IRWLANNRIYIT*YYQNEICYI 196
           D ++ D   I I+W++ N++Y+  Y  +  CYI
Sbjct: 262 DFFIDDTSKISIKWMSINQLYLLIYLISGFCYI 294


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 272 SSVNQIS----EVQSPPGYLISCGNAGPSGSAPKSTRKSGSNFMPPFTVSTSNFTN 427
           +S NQIS    +V SPP         G +GS PK+T  S +  +PP     +  TN
Sbjct: 56  TSTNQISSLKVDVSSPPSTA-----PGSAGSTPKTTPVSLNAGVPPSNTGANITTN 106


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 101 NQFALYIFDILQSVIFKNKCERQ 33
           NQF LYIF +L +V + N  ++Q
Sbjct: 354 NQFELYIFGMLATVKYYNFLKKQ 376


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 272 TKISFVGWLIIGFILHNIIKTKSAIY 195
           T I++  W I+GFI + +I+ K AI+
Sbjct: 759 TGINYSSWAIVGFIFNYVIR-KRAIH 783


>SPBC146.08c |||translation initiation factor
           eIF1A-like|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 516 LDGKRLYVSSSLYSPWDKQVY-PK 448
           +DG  LYV  S    W KQ+Y PK
Sbjct: 79  IDGTILYVVQSPLKNWKKQIYWPK 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,543
Number of Sequences: 5004
Number of extensions: 57648
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)