Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_P10
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428... 144 6e-35
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 32 0.38
02_01_0411 - 2998806-3000938 31 0.50
04_04_0588 - 26412487-26413887 31 0.66
03_03_0016 - 13761007-13761489,13761929-13762096,13763086-137631... 29 2.0
01_07_0156 - 41544396-41544755,41544854-41544983,41545085-415453... 29 2.7
10_01_0225 - 2395100-2395323,2395358-2395499 29 3.5
05_03_0458 + 14280953-14281866,14281964-14282912 28 4.6
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239 28 6.1
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 28 6.1
05_01_0474 - 3797926-3798609 28 6.1
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552... 28 6.1
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 27 8.1
>01_06_1797 +
39941482-39941608,39942302-39942497,39942601-39942828,
39943157-39943388,39943476-39943583,39943696-39943968,
39944261-39944545
Length = 482
Score = 144 bits (348), Expect = 6e-35
Identities = 60/96 (62%), Positives = 82/96 (85%), Gaps = 1/96 (1%)
Frame = -1
Query: 564 VKGKILQGGPQMLQLSLDGKRLYVSSSLYSPWDKQVYPK-MAEEGGWLVKLDVDTVNGGM 388
VKG L+GGPQM+QLSLDGKR+YV++SL+S WD+Q Y + + ++G ++++DVDT GG+
Sbjct: 387 VKGHRLRGGPQMIQLSLDGKRIYVTNSLFSRWDEQFYGQDLVKKGSHMLQIDVDTEKGGL 446
Query: 387 KLDPDFLVDFGAEPDGPALPHEMRYPGGDCTSDIWL 280
++P+F VDFGAEP+GP+L HEMRYPGGDCTSDIW+
Sbjct: 447 SINPNFFVDFGAEPEGPSLAHEMRYPGGDCTSDIWI 482
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 31.9 bits (69), Expect = 0.38
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 284 QISEVQSPPGYLISCGNAGPSGSAPKSTRKSGSNFMPPFTVSTSNFTNHPPSSAILG*TC 463
Q +V+ PP G +G+A K+ +S + +S N A+ G
Sbjct: 137 QPKQVRRPPRRF-KRGAGRRAGAASKAPDRSAAAAAAAAALSV----NSSSQEAVCGNKY 191
Query: 464 LSQ-GEYSDDETYKRFPSNDSCNICGPPW 547
L + GE DE + P DS N+CG PW
Sbjct: 192 LFRDGEDGLDELQQHVPPQDSRNVCGIPW 220
>02_01_0411 - 2998806-3000938
Length = 710
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +2
Query: 290 SEVQSPPGYLISCGNAGPSGSAPKSTRKSGSNFMPPFTVSTSNFTNHPPSSAILG 454
S V + P +++ + +G+ P ST + SN + VS ++FT H PSS +G
Sbjct: 139 SSVSNQPLQVLNISSNQFTGAFPSSTWEKMSNLVA-INVSNNSFTGHIPSSFCIG 192
>04_04_0588 - 26412487-26413887
Length = 466
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 299 QSPPGYLISCGNAGPSGSAPKSTRKSGSNFMPPFTVSTSNFTNHPPSS 442
+SP L S + S SAP S R S ++ P +S+S + PPS+
Sbjct: 54 RSPDRLLRSASSLSTSSSAPPSPRSSSASDAPVRVISSSPSSPSPPSA 101
>03_03_0016 -
13761007-13761489,13761929-13762096,13763086-13763130,
13763380-13763447,13763532-13763586,13763659-13763814,
13763904-13764002,13764792-13764872,13765513-13765636,
13765938-13766032,13766434-13766560,13766768-13766871,
13767278-13767359,13768012-13768049
Length = 574
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 480 YSPWDKQVYPKMAEEGGWLVKLDVDTVNG-GMKLDPDFLVDFGAEPDGPALP 328
YSP D + + +G W + D++ VNG G KL + P+G ALP
Sbjct: 16 YSPNDDLLEQEFMLKGRWFQRKDLEVVNGQGKKLQCSHYMPV-VIPEGKALP 66
>01_07_0156 -
41544396-41544755,41544854-41544983,41545085-41545374,
41545482-41545663,41545784-41546003,41546121-41546139,
41546394-41546654,41546775-41546863
Length = 516
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -3
Query: 574 TDDSQRQDPPGWTTNV--ATIIGWKTLVCLIVAILTLG*TSLP*NG*RGWVVSKVRRGYC 401
T ++ R P G T+V AT+ GW L+ L A+ + P N G+ +++ Y
Sbjct: 261 TKNADRSGPIGIITSVVCATVFGWIYLLALTTAVTDIPYLLSPGNDAGGYAIAQAL--YT 318
Query: 400 EWRHEVGSG 374
+ GSG
Sbjct: 319 AFHRRFGSG 327
>10_01_0225 - 2395100-2395323,2395358-2395499
Length = 121
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 543 GGPQMLQLSLDGKRLYVSSSLYSPWDKQVYPKMAEEGG 430
GGP LS+ + + SSSL SPW + Y ++EGG
Sbjct: 9 GGPL---LSIPRQHSWDSSSLASPWVVEYYVSDSDEGG 43
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 302 SPPGYLISCGNAGPSGSAPKSTRKSGSN-FMPPFTVSTSNFTNHPPS 439
SPP SC NA PS + ST S + +PP +TS+ ++ P S
Sbjct: 21 SPPS---SCRNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSS 64
>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
Length = 569
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 335 AGPSGSAPKSTRKSGSNFMPPFTVSTSNFTNHPPSSAILG 454
A + S+P +G N +PP + S S+F + P SS + G
Sbjct: 52 ATAASSSPAPGGGAGRNKLPPKSPSISSFHSSPTSSRLAG 91
>05_05_0042 -
21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 366 VDFGAEPDGPALPHEMRYPGGDCTSDIWLTD 274
+DFG EP G A H + PG DC D TD
Sbjct: 662 LDFG-EPPGTAESHSLVIPGPDC-GDATFTD 690
>05_01_0474 - 3797926-3798609
Length = 227
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 305 PPGYLISCGNAGPSGSAPKSTRKSG 379
PP Y S G G G A +R+SG
Sbjct: 77 PPSYYASAGKKGGGGGASSGSRRSG 101
>01_05_0801 +
25353708-25353914,25354307-25354429,25355035-25355205,
25355303-25355392,25355497-25355583,25355664-25355719,
25355812-25355905,25356032-25356144,25356211-25356283,
25356603-25356683,25356865-25356951,25357031-25357135,
25357279-25357385,25357481-25357541,25357931-25358158,
25359720-25360677,25360816-25360997,25361237-25361326,
25361422-25361709,25361844-25362056,25362560-25362784
Length = 1212
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = -1
Query: 558 GKILQGGPQMLQLSLDGKRLYVSSSLYSPWDKQVYPKMAEEGGWLVKLDVDTVNGGMKLD 379
G+++Q + L+ ++ S Y+ DKQ YP +A G +++K DV + +K
Sbjct: 259 GRVIQFLEKPEGADLESMKVDTSFLSYAIDDKQKYPYIASMGIYVLKKDV--LLDILKSK 316
Query: 378 PDFLVDFGAE 349
L DFG+E
Sbjct: 317 YAHLQDFGSE 326
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 543 GGPQMLQLSLDGKRLYVSSSLYSPWDKQVYPKMAEEGGWLVKLDVDT 403
GG +Q++L+ + + S P +PK EEG WLV D T
Sbjct: 2038 GGSVTVQVTLEREMADLLQSEAGPVHAPRFPKPKEEGWWLVIGDRST 2084
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,893
Number of Sequences: 37544
Number of extensions: 354669
Number of successful extensions: 888
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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