Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P09
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.4  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   9.6  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   9.6  

>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 180 FYNVKNIVLISIFNFVL 130
           F++VKN+ L+ IF FVL
Sbjct: 2   FFSVKNVFLLGIFGFVL 18


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 595 LXWGKRKQCSDRNLVGSY 648
           L WG   QCSD+N   +Y
Sbjct: 312 LRWGTCVQCSDKNCYAAY 329


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 1   NLHNISFXNPSLF 39
           NLHN+ F NP LF
Sbjct: 415 NLHNLPFENPCLF 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,047
Number of Sequences: 5004
Number of extensions: 40661
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)