Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P08
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    27   2.4  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.2  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   5.6  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   9.7  
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   9.7  

>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 527 IPFNTSXTSKLPFYNSKGEKIGEVNMMYN 441
           +PF+    S L   NS GE IG   M YN
Sbjct: 62  VPFSLMKPSDLVHINSDGEIIGGSKMKYN 90


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 527 IPFNTSXTSKLPFYNSKGEKIGEV 456
           IP++ S T ++ FY S+G   GE+
Sbjct: 32  IPYSLSLTKQIRFYASEGTDAGEM 55


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 369 FYTVWQFNDSCV*YFNVR 422
           ++T +QFND  + YFN+R
Sbjct: 289 WFTTYQFNDFNLAYFNIR 306


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 271 EELRISKEEFSDDEVDCFIPRFK 203
           EE+  S++EFSDDE +    + K
Sbjct: 356 EEINPSEQEFSDDEAEVAAKQLK 378


>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 84  FDTNIGVRAICGKTAFLASNKSSIPMAFFNTDVISKLDSILNLGM 218
           +DT IG++  CG    +  N +     F  +D I++L +   +G+
Sbjct: 142 YDTTIGLKTECGSYVKIVGNSNPREWLFL-SDNINELKAARKVGL 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,725
Number of Sequences: 5004
Number of extensions: 39772
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)