Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_P08
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 38 0.007
11_01_0771 + 6453130-6454488 37 0.009
11_01_0767 + 6438648-6438809,6439146-6440000 34 0.065
11_02_0012 - 7346282-7347136,7347234-7347593 32 0.26
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 30 1.1
04_04_0619 + 26652923-26653267,26653440-26654273 30 1.4
01_01_1152 + 9170628-9171899 30 1.4
11_02_0014 - 7352619-7352918,7353173-7353418 29 1.8
11_02_0011 - 7337618-7338496,7338596-7338991 29 1.8
11_01_0750 - 6315126-6315896,6316371-6316784 29 2.4
04_03_0967 + 21318974-21319140,21321677-21321821,21322045-213221... 27 9.9
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 37.5 bits (83), Expect = 0.007
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -1
Query: 548 YFKGQWTIPFNTSXTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNARVIELPY--- 378
YFKG WT F+ S T F+ G+ + M ++ Y S N +V++LPY
Sbjct: 251 YFKGAWTEKFDASKTKDGEFHLLDGKSVQAPFMSTSKKQYILS---YDNLKVLKLPYQQG 307
Query: 377 GVENRLSMLIMVP 339
G + + SM I++P
Sbjct: 308 GDKRQFSMYILLP 320
Score = 35.1 bits (77), Expect = 0.037
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -1
Query: 548 YFKGQWTIPFNTSXTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNARVIELPY--- 378
YFKG W F+ S T F+ GE + + M R S+ L +V++LPY
Sbjct: 503 YFKGAWAEKFDVSKTEDGEFHLLDGESV-QAPFMSTRKKQYLSSYDSL--KVLKLPYLQG 559
Query: 377 GVENRLSMLIMVP 339
G + + SM I++P
Sbjct: 560 GDKRQFSMYILLP 572
>11_01_0771 + 6453130-6454488
Length = 452
Score = 37.1 bits (82), Expect = 0.009
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 548 YFKGQWTIPFNTSXTSKLPFYNSKG 474
YFKG+W PFN S T + PFY G
Sbjct: 211 YFKGKWDRPFNESDTERKPFYRHDG 235
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 34.3 bits (75), Expect = 0.065
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 548 YFKGQWTIPFNTSXTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNA-RVIELPY 378
YFKG+W PF+ S T++ F G + EV M R + + ++ + RV+ LPY
Sbjct: 96 YFKGEWLAPFDKSDTAEREFRRLDGSSV-EVPFM-QRPSGSYHHVACHDGFRVLRLPY 151
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 32.3 bits (70), Expect = 0.26
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 226 DCFIPRFKIESNLDMTSVLKNAMGIEDLFDARKAVLPHMARTPM-FVSKVVHK 71
D +PRFK+ +M VLK MGI FD K L M + V KV+H+
Sbjct: 289 DLRVPRFKVSFYSEMNEVLK-GMGIGAAFDVGKVDLSGMIDGELVVVEKVMHR 340
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 548 YFKGQWTIPFNTSXTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNA-RVIELPY 378
YFKG+W+ PF T+ F+ G + M Y I + +V++LPY
Sbjct: 162 YFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFMSSREDQY----IGFYDGFKVLKLPY 215
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -1
Query: 548 YFKGQWTIPFNTSXTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNARVIELPY--G 375
YFKG WT F+ S T F G+ + M ++ Y S + +V++LPY G
Sbjct: 43 YFKGAWTEKFDASKTKDGEFRLLDGKSVLAPFMSTSKKQYLSSYDSL---KVLKLPYQKG 99
Query: 374 VENR-LSMLIMVP 339
+ R SM I++P
Sbjct: 100 RDLRQFSMYILLP 112
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 241 SDDEVD-CFIPRFKIESNLDMTSVLKNAMGIEDLFDARKAVLPHMA 107
S+ EV C +P+FK S LD L +G+ FD A L MA
Sbjct: 262 SEQEVSPCMVPKFKFSSELDARGALAK-LGLGAPFDPLAADLSRMA 306
>01_01_1152 + 9170628-9171899
Length = 423
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 548 YFKGQWTIPFNTSXTSKLPFY 486
+FKG W++PF+ S T PF+
Sbjct: 197 HFKGTWSLPFHPSATFHAPFH 217
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 548 YFKGQWTIPFNTSXTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNARVIELPY 378
YFKG+W+ PF T+ F+ G + V M +R N V++LPY
Sbjct: 124 YFKGKWSDPFPRESTTTGKFHRLDGSSV-NVRFMRSREDQYIGFYDGFN--VLKLPY 177
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 548 YFKGQWTIPFNTSXTSKLPFYNSKGEKIGEVNMMYNR 438
YFKG+W+ PF S T+ F+ G + +V M +R
Sbjct: 174 YFKGKWSNPFPRSSTTTGKFHRLDGSSV-DVPFMSSR 209
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = -1
Query: 548 YFKGQWTIPFNTSXTSKLPFYNSKGEKIGEVNMMYNRHTYPFSNIKILNARVIELPYGV- 372
YF+G+W + T++ FY G + + Y+R T F+ N +VI+LPY
Sbjct: 180 YFRGRWLDRDDLRRTTEQKFYCLDGTSVEVPFVEYDR-TRLFAVHD--NFKVIKLPYKQG 236
Query: 371 --ENRLSMLIMVPN 336
E + SM I +P+
Sbjct: 237 KNERKFSMYIFLPD 250
>04_03_0967 +
21318974-21319140,21321677-21321821,21322045-21322164,
21322261-21322395,21322503-21322564,21322804-21322879,
21323555-21323656,21323732-21323848,21324403-21324461,
21324927-21325101,21325233-21325367,21325429-21325545,
21325686-21325794,21325939-21326051,21326561-21326615,
21326657-21326769
Length = 599
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 173 VEECH-GY*GFV*CEESCFTTYGSDSYVCVE 84
V +CH G+ + C++ CF YG + Y V+
Sbjct: 429 VAKCHDGFQVSIPCKKRCFRLYGKEGYPLVD 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,238,848
Number of Sequences: 37544
Number of extensions: 223552
Number of successful extensions: 520
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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