Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P08
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   0.51 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.88 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   1.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.2  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 473 EKIGEVNMMYNRHTYPFSNIKILNARVIE-LPYGVENRLSMLIMVP 339
           +++   NM   RH      +K+  A  ++ LP+GVEN +S +   P
Sbjct: 16  QQVMRQNMKLKRHLAQ-DKVKVRVAEEVDPLPFGVENTISSVPQPP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 434  TYPFSNIKILNARVIELPYGVENRLSMLIMVPNPWCFTCKYVHEV 300
            T+P   +  LNAR++EL  G            NPW   CK++ E+
Sbjct: 904  TFPVWQVT-LNARLVELSLG-----------SNPWSCRCKFLQEL 936


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = +2

Query: 80  HFRHKHRSPSHMW*NSFP----RIKQILNTHGILQHR 178
           HF+ KH     ++   F     R K  L TH  LQHR
Sbjct: 24  HFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHR 60


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 325 SLASMFMKFKELSLDSFFEELRISKEEFSDD 233
           S  +MF KF  L    +F+E  ++    +D+
Sbjct: 458 SFFNMFKKFASLKKSPYFKEANLNTRMLNDN 488


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 277 FFEELRISKEEFSDDEVDCFIPRFKIESNLDM 182
           F  ++     E  D  VD F+ +  IES LDM
Sbjct: 18  FVADINSINVEDMDFRVDMFVRQSWIESRLDM 49


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 325 SLASMFMKFKELSLDSFFEELRISKEEFSDD 233
           S  +MF KF  L    +F+E  ++    +D+
Sbjct: 458 SFFNMFKKFASLKKSPYFKEANLNTRMLNDN 488


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 536 QWTIPFNTSXTSKLPFYNSKGEKIGEVNMM 447
           QW IPFN      L  +  K   +   ++M
Sbjct: 293 QWRIPFNGIQMPNLMVFYEKSLALAAFSLM 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,187
Number of Sequences: 438
Number of extensions: 2549
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)