Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_P07
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 31 0.17
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 29 0.53
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 28 0.93
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.2
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 27 2.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.0
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 25 6.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 8.7
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -3
Query: 388 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHPRAVPTESAAQL 254
LPPGWE D G+ Y+ + +T +WI P + +V +AA+L
Sbjct: 207 LPPGWERRTD-NLGRTYYVDHNTRSTTWIRP-NLSSVAGAAAAEL 249
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 388 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 296
LPPGWE+ + G+ YF + +T +W+ P
Sbjct: 290 LPPGWEQRYTP-EGRPYFVDHNTRTTTWVDP 319
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 415 KEKVLELWPLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHPRAV 278
++ V +L PLP GWE + YF + +T +W P P ++
Sbjct: 338 QQPVSQLGPLPSGWEMRL-TNTARVYFVDHNTKTTTWDDPRLPSSL 382
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 29.1 bits (62), Expect = 0.53
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 415 KEKVLELWPLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHPRAVPTESAAQ 257
++ +E PLP GWE E Y YF + T +W P V ++S ++
Sbjct: 235 QQVAVEKGPLPAGWEMRLSEDY-HVYFVDHSTKTTTWSDP-RDNVVASDSVSE 285
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 388 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 296
LPPGWE D G+ Y+ + +T +W P
Sbjct: 238 LPPGWERRAD-SLGRTYYVDHNTRTTTWTRP 267
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 424 LEHKEKVLELWPLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHPRAV 278
L + + L PLP GWE + YF + +T +W P P A+
Sbjct: 354 LMQPQSLSHLGPLPSGWEMRLTNS-ARVYFVDHNTKTTTWDDPRLPSAL 401
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 367 VFDEGYGQHYFWNVHTNLVSWIPP--GHPRAVPTESAAQLREERL 239
++D +YFW+ TN SW P + P + A+++ RL
Sbjct: 195 IWDPSQQAYYFWDTLTNTTSWNNPLEDEEQTSPLDYTAKVQFNRL 239
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 391 PLPPGWEEVFDEGYGQHYFWN 329
PLPPGW E G Y+WN
Sbjct: 4 PLPPGWTE-HKAPSGIPYYWN 23
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 502 SNIYHECXTFCIKRWKQGKLVPTETYLEH 416
S I EC F ++RW+Q +P Y H
Sbjct: 2680 SRIIDECMQFSLRRWQQ---LPKRVYQSH 2705
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 391 PLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHPRAVP 275
P P G+ + GYG N+ + V +PP P P
Sbjct: 258 PTPDGYLKFARHGYGFTRMQNLKSGKVESVPPKKPLVSP 296
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = -3
Query: 388 LPPGWEEVFDEGYGQHYFWN--VHTNLVSWIPP 296
LP GW +D YG +++ N W PP
Sbjct: 10 LPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 544 FVDPVK-GHRGCPNKSNIYHECXTFCIKRWKQG 449
+VDP + G +GCP S I FC+ ++QG
Sbjct: 294 YVDPRENGVQGCPEGSPIGAGGACFCVVGFQQG 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,126
Number of Sequences: 5004
Number of extensions: 43995
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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